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Detailed information on CNT3021341


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-121

BLAST vs NONCODE:
NONMTRT002043, E-value = 2e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3072510Citrullus lanatusQuercus suber56.6492.9583.93448forward
CNT30540712Citrullus lanatusBrassica napus51.8358.5784.15410forward
CNT3078942Citrullus lanatusBrassica juncea53.7395.0883.29425forward

Expression of CNT3021341

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MLWSFLLRSSQKFAFHHEDAAQGEEWTPFEYCSRLVSVHLRAACLRRSTFAGPGEYLLCLES*

>peptide 2 (76 aa)
MIDMMTDTEYYTEVQRSVLKATTKAKDKVEGGLLLNVVIGQCTSILQLFSSENQPLLVGRDTLLVLDFSLHVVNSV*

>peptide 3 (29 aa)
CATCFKNEYTSQMRIIINRNEEDRIYYYL*

Sequence

>CNT3021341
GTGTGCAACTTGCTTTAAGAACGAATATACATCACAGATGAGAATAATAATAAACCGGAACGAAGAAGATAGAATATATTATTATTTGTAAACTGGGTTC
TCGAACAGAGAACATAACAAAGACTAGAATACGAGCAGGATTAAGAGAGAGGAAGCATAAGCAGACATGATAGACATGATGACAGATACTGAGTATTATA
CCGAAGTCCAGAGATCAGTTTTAAAGGCCACCACGAAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCAT
CCTCCAACTGTTTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTCACGTTGTCAATAGTGTCTGAGCT
CTCAACCTCCAATGTTATGGTCTTTCCTGTTAAGGTCTTCACAAAAATTTGCATTCCACCACGAAGACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGA
ATATTGTAGTCGGCTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATCTTAG
CTTTGACATTGTCGATTGTGTCTGAGCTTTCAACCTCTAGTGTAATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCATTCCACCACGAAGACGGAG
CACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGC