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Detailed information on CNT3021333


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 9e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549166Citrullus lanatusIpomoea triloba52.0345.8381.17308forward
CNT30516897Citrullus lanatusJuglans regia96.7964.8282.2573forward
CNT30267761Citrullus lanatusChenopodium quinoa88.0163.8579.85521forward
CNT30403468Citrullus lanatusBeta vulgaris75.1757.4978.43445forward
CNT30628702Citrullus lanatusVigna unguiculata68.2458.9879.46404forward
CNT30489004Citrullus lanatusOlea europaea40.238.7684.87238forward
CNT3042412Citrullus lanatusPrunus dulcis88.0170.3180.61521forward
CNT3091337Citrullus lanatusSolanum tuberosum89.0264.5878.75527forward
CNT30559889Citrullus lanatusActinidia chinensis55.0779.983.13326forward
CNT30235097Citrullus lanatusBrassica oleracea92.5768.4180.66548forward
CNT30216750Citrullus lanatusKalanchoe fedtschenkoi74.499080.27441forward
CNT30205370Citrullus lanatusHelianthus annuus20.6118.6886.07122forward
CNT30154791Citrullus lanatusPrunus persica97.6474.3980.97578forward
CNT3028162Citrullus lanatusTheobroma cacao84.6389.381.24501forward
CNT30330871Citrullus lanatusDioscorea rotundata72.859.6179.12431forward

Expression of CNT3021333

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MLGCRKETWDYKKVMLGCRRVKLGCRRVKLGCRQGKWDCKQGKWDCKQVRWGCSLGKWGCNWERWANKMDS*

Sequence

>CNT3021333
GAAGGAGACAACCGTGGACTACTGGGTGAGTATGCCTGTGATGGGCTGTATTTAGCTGATTGAGGATTATAACTAGGTGATGTGGGACTATAGCTAGGAG
AAGTGGGGCTATAGCTCGGTGATGTGGGACTATAGCCAGGGGAGGTGGGGCTATATGCTGGAGAGGTGGGGCTGTACGAGGGTGATGTAGGACTGTAAGA
GGGAGATGTTGGGCTGTAGGAAGGAGACGTGGGACTATAAGAAGGTGATGTTGGGCTGTAGGAGGGTGAAGTTGGGCTGTAGGAGGGTGAAGTTGGGCTG
TAGGCAGGGGAAGTGGGACTGTAAGCAGGGGAAGTGGGACTGTAAGCAGGTGAGGTGGGGCTGTAGCTTGGGGAAGTGGGGCTGTAACTGGGAGAGGTGG
GCGAATAAGATGGACTCGTAGGAGAATATGCAGGACTAGTTGGGCTATAACCAGGCGAACTAGGACTGTAAGTCGGAGATGTTGGACTGTAGCCAGGAGA
GGTAGGGCTGTATCCTGGAGAAGTAGGACTATAACCAGGAGATGTGGGACTATAGCCAGGGGATGATGGACTGTAGCCTGGAGATGATGGGC