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Detailed information on CNT30213223


BLAST search results

BLAST vs Swiss-Prot:
sp|P80082|ATPAM_SPIOL, E-value = 1e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30397046Helianthus annuusTriticum turgidum19.352492.3178reverse complement
CNT30481719Helianthus annuusChara braunii24.8115.4889100forward

Expression of CNT30213223

Peptides detected in this lncRNA

>peptide 1 (31 aa)
QGYSFHTAGKFNHFPSLNLVQPINTCNPISN*

>peptide 2 (33 aa)
MILLILDIRGNTAFNFKELYFRYSYRSDSSLYY*

>peptide 3 (48 aa)
SRLFLSHRWQIQPFPQLESRSTHKHVQSHLQLRPLDQSHPLENSCKSC*

Sequence

>CNT30213223
TTCAAGGCTATTCCTTTCACACCGCTGGCAAATTCAACCATTTCCCCAGCTTGAATCTCGTTCAACCCATAAACACGTGCAATCCCATCTCCAACTGAGA
CCACTCGACCAATCTCATCCACTTGAAAATTCGTGTAAAAGTTGCTAATTCTACTTTCTAATAGAGTCGTTAGTTCAGCAGCTCTCGGAGAGAATTCCAT
GATTCTACTGATTTTGGATATAAGGGGGAATACCGCTTTCAATTTCAAAGAGCTCTATTTCCGCTATTCTTATAGATCAGATTCGAGCTTGTACTACTAG
AACTAGGAGTTGAGATAGCGCGCGGAACACCAACACAATCCTTTGTTAAATGTCTGCGAGCTCCTTCTTCTTTCGTGAAAGCATACGAGTCGTTATGAGT
TAG