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Detailed information on CNT30213185


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FF53|PIP24_ARATH, E-value = 1e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375565Helianthus annuusArabidopsis thaliana9.0420.249050forward
CNT3070603Helianthus annuusQuercus suber22.632.8983.2125forward
CNT30632211Helianthus annuusVigna unguiculata17.3631.5883.3396forward
CNT30504332Helianthus annuusNicotiana attenuata13.9222.4585.7177forward
CNT3044723Helianthus annuusPrunus dulcis26.9416.3281.88149forward
CNT30163276Helianthus annuusPistacia vera11.2120.1387.162forward
CNT30385683Helianthus annuusTriticum turgidum15.5538.7484.8886forward
CNT30586754Helianthus annuusMusa acuminata15.1931.1184.5284forward
CNT30552571Helianthus annuusOryza glaberrima13.9230.4384.4277forward
CNT30145515Helianthus annuusMedicago truncatula17.724084.6998forward
CNT30435838Helianthus annuusAegilops tauschii11.2124.987.162forward
CNT30254684Helianthus annuusAvena sativa12.8431.5685.9271forward
CNT30613102Helianthus annuusArabis alpina12.6626.9285.7170forward
CNT30227661Helianthus annuusAnanas comosus15.0136.485.5483forward
CNT30680173Helianthus annuusTriticum urartu11.2125.5187.162forward
CNT30355349Helianthus annuusLactuca sativa23.1521.3380.47128forward
CNT30704435Helianthus annuusPrunus avium25.8621.6382.52143forward
CNT30120512Helianthus annuusCitrus clementina49.7391.9780.36275forward
CNT30101140Helianthus annuusOryza rufipogon10.3121.7691.2357forward
CNT30116611Helianthus annuusOryza nivara10.3128.2291.2357forward

Expression of CNT30213185

Peptides detected in this lncRNA

>peptide 1 (41 aa)
FSVNDCGPKTTGRVDSSAGDWDGGQVNHEYGKSDRKRCQHL*

Sequence

>CNT30213185
CTTTTCCGTAAATGACTGCGGCCCCAAAACTACGGGCAGGGTTGATTCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAACCATGAATACGGCAAATCC
GATAGGAAGAGGTGCCAACACCTTTAATCCAAACAATTATATATATGTTAAAACTTAAAACAACAAGAGGATACATGCATTTGGAATATATGCAGCAGAG
TAAGTATATACTTACGGGGACATGAGAGTCACGTGCGTTTCTCTTTGGGTCAGTGGCTGAGAAGACGGTGTAGACTAGGACGAATGTGCCAATGATTTCC
GCACCCAAACCGGTGCCTTTGTTGTACCCATCTGCAAGCTCATTGGCACCACCGCCATAATTGGTGTAGTAAGACTTTTGGAAAGCTTTCACCAGACCAC
AACCACAGACCGCACCCAAGCATTGAGCCACCATATACATAACCGCCCTTGGGAGGGTCACCTTCCTTGCCAAAAACAGCCCGAATGTGACCGCAGGGTT
AATGTGTCCACCAGAGATACCAGCAGTGCAGTAAACGAGAACAAAGATCATGC