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Detailed information on CNT30213184


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40281|RCA_MALDO, E-value = 2e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727557Helianthus annuusCorchorus capsularis18.2280.8286.94337forward
CNT30185579Helianthus annuusSecale cereale8.9243.1985.45165forward
CNT30295268Helianthus annuusTriticum aestivum18.3283.2980.83339forward
CNT30223071Helianthus annuusHordeum vulgare16.5441.0283.01306forward
CNT30439608Helianthus annuusAegilops tauschii22.4334.5883.37415forward
CNT30663145Helianthus annuusTriticum dicoccoides12.1147.6686.16224forward
CNT30310249Helianthus annuusCamelina sativa5.4644.8989.11101forward
CNT30233037Helianthus annuusAnanas comosus11.7872.1985.78218forward
CNT30683693Helianthus annuusTriticum urartu12.1128.7286.16224forward
CNT30355370Helianthus annuusLactuca sativa20102.2185.68370forward
CNT30642662Helianthus annuusCannabis sativa11.9543.0890.5221forward
CNT30120246Helianthus annuusCitrus clementina19.9594.6285.64369forward
CNT3038844Helianthus annuusCucumis melo1230.9288.29222forward

Expression of CNT30213184

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MRGAYSVEKSLPVTIIGTRGFSSLLYIPGSWTLVGLSAMFMRVALTIWLLTVYCVAAHFPLLDDIGCFTVPLSDELCGLSSVSTFQFSGAHHDR

>peptide 2 (87 aa)
MKKIKGETKFTFSTNKQNLQNDNKNPWKKTQYLTFLMKNLKKPKIYRCSFHHHIKCSRHLHFLFLFVRCIYLQVSYILILCLIKHLR*

>peptide 3 (65 aa)
MVLELVVSLEAASLSPGIEVRLAYILPFPDPINSFTIDEIMLCLFMVCVHCVKNGTRFGNGVKMH*

>peptide 4 (38 aa)
MDCPGKVSTSLTMSSSATLSVRKIPIHTPIRSSLVGAQ*

>peptide 5 (32 aa)
MVILRSLTYRCLFMVWFWSWWSHWKQLRYPLG*

>peptide 6 (32 aa)
MSGVPPLSSQASFQWFQHQLLRSTSSLRHRTL*

>peptide 7 (31 aa)
MISAASRYRCLMSFAGSPAFPLSNSPALIMIG

Sequence

>CNT30213184
CTAACAAGGGATTCTTAGTTTCTTACCGATGAAAAAGCTATTTTAAAGCTAAACTCTCAGTGTTTCTTTGAGAGTTGATACATTAATATCTTTTCAACTA
ATTATGTGTCTAACCAAACATTATATAGATAACTTTTAATCTATTTCTAGCCATTAAGAAAATGATATTAGACGAGCTATAGGGATCCGTTTGTTAGTGC
GATTTGCATACATTTATGTCTATTATTGTTGATAATGCGAGTAGCAATCGCACTCAAGGGTTTGATAGGCAAAACGGGGTAATCCTTGCATTCTAAAAGG
GGTGTTTATTTAGTTGCATATTGGACTCGATTAGCTACACCAATTCTGTTTTGAAGGGATGTTTATTAAGTGAGTATGAGAATTTGAAGGATACGCCGTT
GACGATGATGATGGGGTTTAATAAGTATTATGGTAATATTACGTAGTTTAACTTATCGGTGTTTATTCATGGTATGGTTTTGGAGCTGGTGGTCTCACTG
GAAGCAGCTTCGCTATCCCCTGGGATAGAGGTAAGGCTTGCTTACATCCTACCCTTCCCAGACCCTATCAATAGCTTCACTATAGATGAGATTATGTTGT
GTTTATTCATGGTATGTGTGCATTGTGTTAAGAATGGGACAAGGTTTGGCAATGGTGTAAAGATGCATTAAATCGAAACCGAAGAAACTGAAGAACACCT
TACTAAATGTGATTACATTTGAGAGCCCACATGAATGAAGAAAATAAAAGGTGAAACCAAATTCACTTTTTCTACCAACAAACAAAATTTACAAAATGAC
AATAAAAATCCATGGAAAAAAACACAATATTTGACATTCTTAATGAAAAACCTTAAAAAGCCTAAGATATATAGATGCAGCTTCCATCATCATATCAAGT
GTTCCAGACATCTGCATTTTCTATTCCTTTTTGTCCGCTGCATATATTTACAAGTTAGTTATATTCTTATATTATGTTTGATCAAACATTTGAGGTAATT
AAGAGTAAGTTTGTGGGCTAACCAAAAAATTTGCCGGTTTCCATGGCATCCTTGTTAGCGTCTCCAAGAGCCGCGGAGTCCAGATAGGTTTCGGCCAATT
GGACTCTCTTCACGTTCTCTTGTTCCTGAACAAGCATAAATCCATACTCTAGGAGCTTCTCTATTGTCATCTTTGGTTGCTCGAATGTCGGGGGTCCCTC
CCTTGAGTTCACAAGCTTCTTTCCAATGGTTTCAACACCAACTTCTCCGATCCACTTCCTCACTTCGTCATCGTACACTCTAGCCCTCAACGCGCCAAAG
AAATCTAATTAAAACCACCAAACACATTGTAACAAATGTTCCGTCAGTTTGTTGGTGATTTTAGTGTCATCGTAATCATTTCAGTATGACGTATAATTTA
CTTAATACCGAAGGGAAATATTACCGATGGATTGTCCTGGGAAAGTATCTACTAGCTTGACAATGTCTTCGTCGGCCACATTGTCAGTACGGAAAATACC
GATACACACACCAATACGGTCCTCTCTAGTGGGAGCCCAGTAGAACTTTTCCATACGTCCGTCACGGATGAGAGGAGCATACAGCGTCGAAAAATCGTTA
CCAGTGACGATAATTGGGACACGTGGGTTCTCCTCCTTGTTGTACATTCCAGGGAGTTGGACATTGGTGGGGTTATCAGCAATGTTCATGAGGGTAGCGT
TGACCATCTGGTTGTTGACTGTGTATTGTGTTGCAGCACATTTTCCCCTTCTTGATGATATCGGCTGCTTCACGGTACCGTTGTCTGATGAGCTTTGCGG
GCTCTCCAGCGTTTCCACTTTCCAATTCTCCGGCGCTCATCATGATAGGT