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Detailed information on CNT30213161


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40281|RCA_MALDO, E-value = 2e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604727Helianthus annuusOryza punctata8.6954.6886.3146forward

Expression of CNT30213161

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSGVPPLSSQASFQWFQHQLLRSTSSLRHRTL*

>peptide 2 (32 aa)
MVILRSLTYRCLFMVWFWSWWSHWKQLRYPLG*

>peptide 3 (65 aa)
MVLELVVSLEAASLSPGIEVRLAYILPFPDPINSFTIDEIMLCLFMVCVHCVKNGTRFGNGVKMH*

>peptide 4 (87 aa)
MKKIKGETKFTFSTNKQNLQNDNKNPWKKTQYLTFLMKNLKKPKIYRCSFHHHIKCSRHLHFLFLFVRCIYLQVSYILILCLIKHLR*

>peptide 5 (36 aa)
MRGAYSVEKSLPVTIIGTRGFSSLLYIPGSWTLVGLS

>peptide 6 (38 aa)
MDCPGKVSTSLTMSSSATLSVRKIPIHTPIRSSLVGAQ*

Sequence

>CNT30213161
CTAACAAGGGATTCTTAGTTTCTTACCGATGAAAAAGCTATTTTAAAGCTAAACTCTCAGTGTTTCTTTGAGAGTTGATACATTAATATCTTTTCAACTA
ATTATGTGTCTAACCAAACATTATATAGATAACTTTTAATCTATTTCTAGCCATTAAGAAAATGATATTAGACGAGCTATAGGGATCCGTTTGTTAGTGC
GATTTGCATACATTTATGTCTATTATTGTTGATAATGCGAGTAGCAATCGCACTCAAGGGTTTGATAGGCAAAACGGGGTAATCCTTGCATTCTAAAAGG
GGTGTTTATTTAGTTGCATATTGGACTCGATTAGCTACACCAATTCTGTTTTGAAGGGATGTTTATTAAGTGAGTATGAGAATTTGAAGGATACGCCGTT
GACGATGATGATGGGGTTTAATAAGTATTATGGTAATATTACGTAGTTTAACTTATCGGTGTTTATTCATGGTATGGTTTTGGAGCTGGTGGTCTCACTG
GAAGCAGCTTCGCTATCCCCTGGGATAGAGGTAAGGCTTGCTTACATCCTACCCTTCCCAGACCCTATCAATAGCTTCACTATAGATGAGATTATGTTGT
GTTTATTCATGGTATGTGTGCATTGTGTTAAGAATGGGACAAGGTTTGGCAATGGTGTAAAGATGCATTAAATCGAAACCGAAGAAACTGAAGAACACCT
TACTAAATGTGATTACATTTGAGAGCCCACATGAATGAAGAAAATAAAAGGTGAAACCAAATTCACTTTTTCTACCAACAAACAAAATTTACAAAATGAC
AATAAAAATCCATGGAAAAAAACACAATATTTGACATTCTTAATGAAAAACCTTAAAAAGCCTAAGATATATAGATGCAGCTTCCATCATCATATCAAGT
GTTCCAGACATCTGCATTTTCTATTCCTTTTTGTCCGCTGCATATATTTACAAGTTAGTTATATTCTTATATTATGTTTGATCAAACATTTGAGGTAATT
AAGAGTAAGTTTGTGGGCTAACCAAAAAATTTGCCGGTTTCCATGGCATCCTTGTTAGCGTCTCCAAGAGCCGCGGAGTCCAGATAGGTTTCGGCCAATT
GGACTCTCTTCACGTTCTCTTGTTCCTGAACAAGCATAAATCCATACTCTAGGAGCTTCTCTATTGTCATCTTTGGTTGCTCGAATGTCGGGGGTCCCTC
CCTTGAGTTCACAAGCTTCTTTCCAATGGTTTCAACACCAACTTCTCCGATCCACTTCCTCACTTCGTCATCGTACACTCTAGCCCTCAACGCGCCAAAG
AAATCTAATTAAAACCACCAAACACATTGTAACAAATGTTCCGTCAGTTTGTTGGTGATTTTAGTGTCATCGTAATCATTTCAGTATGACGTATAATTTA
CTTAATACCGAAGGGAAATATTACCGATGGATTGTCCTGGGAAAGTATCTACTAGCTTGACAATGTCTTCGTCGGCCACATTGTCAGTACGGAAAATACC
GATACACACACCAATACGGTCCTCTCTAGTGGGAGCCCAGTAGAACTTTTCCATACGTCCGTCACGGATGAGAGGAGCATACAGCGTCGAAAAATCGTTA
CCAGTGACGATAATTGGGACACGTGGGTTCTCCTCCTTGTTGTACATTCCAGGGAGTTGGACATTGGTCGGGTTATCAGC