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Detailed information on CNT3021247


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 4e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316147Citrullus lanatusCorylus avellana45.2855.9780.1417forward
CNT30703138Citrullus lanatusQuercus lobata43.7676.9181.89403forward
CNT30615836Citrullus lanatusSesamum indicum15.5337.3485.31143forward
CNT30268105Citrullus lanatusChenopodium quinoa39.3143.1584.25362forward
CNT30729539Citrullus lanatusCorchorus capsularis44.360.7181.62408forward
CNT3068683Citrullus lanatusQuercus suber43.8782.1182.18404forward
CNT30524728Citrullus lanatusPhaseolus vulgaris43.8774.8181.68404forward
CNT3098150Citrullus lanatusSolanum tuberosum29.6455.7182.05273forward
CNT30223417Citrullus lanatusHordeum vulgare12.651.183.62116forward
CNT3084565Citrullus lanatusVigna radiata39.6321.682.47365forward
CNT30539234Citrullus lanatusBrassica napus42.8943.1782.03395forward
CNT30511842Citrullus lanatusSolanum lycopersicum23.3446.9482.33215forward
CNT30143836Citrullus lanatusMedicago truncatula40.563.9884.45373forward
CNT30261302Citrullus lanatusBrassica rapa43.6577.7682.34402forward
CNT30653881Citrullus lanatusRosa chinensis44.9538.7680.19414forward
CNT30713695Citrullus lanatusMalus domestica golden22.3745.6883.98206forward
CNT30343308Citrullus lanatusEragrostis tef18.4662.0481.18170forward
CNT30477892Citrullus lanatusArabidopsis halleri41.6935.8983.07384forward
CNT30411763Citrullus lanatusPapaver somniferum34.227.9584.76315forward
CNT30319856Citrullus lanatusAsparagus officinalis11.5137.8683.96106forward
CNT30604168Citrullus lanatusOryza punctata12.642.0382.76116forward
CNT30726386Citrullus lanatusLupinus angustifolius37.3538.2681.98344forward

Expression of CNT3021247

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRRSECSDQSHRPAAGNDGAGRNMRAHVRYTIVLIANVRGSESIKKN*

>peptide 2 (83 aa)
MNRGSRASQMVDLVYFKKKRFNHIVSNQFKSRIPKMMHHVFFSSGEEIIHNDHAVASLNQPVHQMRPDEPGPASHHDPEPFPL*

Sequence

>CNT3021247
CTATTCGACCATAACATCTAAATTTATCATTTTTTTTTCTTTTTCTGACATTTTTCTTAATTCGAGGACCTATAATACCTAAACATTTTATAAACTTGTA
GTTTAACTCTAATTTATCTAAAATAAACTTTGTGCGCACGCTAGAATCCAAGCCTATGCTTTGATAACATGCGCCGGAGTGAATGTTCGGACCAAAGTCA
CCGACCAGCCGCCGGAAACGACGGCGCAGGTCGAAACATGCGCGCGCACGTTAGATATACGATAGTGTTAATTGCTAACGTGCGCGGGAGTGAATCGATT
AAGAAAAATTGAAAGAAGAGAAGAAGAAGAATACTGACCGATGGGATTAACGTTACCCCAGTAGGTTTCAACTTGTGGGTGTTGAAGAGGATCTCCATAA
ACTTCGCTTGTACTAGTCAGTAGAAACCTGGCTCCAACTCTCTTCGCTAATCCCAACATATTCAAAGTTCCCACCACATTGGATATGATTGTCTTGACAG
GGTTGAATTTGTAATGAACAGGGGAAGCAGGGCAAGCCAAATGGTAGATCTGGTCTACTTCAAGAAGAAGCGGTTCAACCACATCGTGTCGAATCAATTC
AAATCTCGGATTCCCAAAATGATGCATCACGTTTTCTTTTCTTCCGGTGAAGAAATTATCCACAACGATCACGCTGTCGCCTCTCTCAATCAGCCGGTCC
ACCAGATGCGACCCGACGAACCCGGCCCCGCCAGTCACCACGATCCGGAGCCCTTTCCGCTTTAACCCCAGTGGGATCTTGCCTCCGGAGTTCATTACTC
GGTGGACTTGGAACCCGGCACGGTGTTCGTACGACGGCGTATTGGACCACCGAGCAAGCTCGGTGGGGATCGGGTCGTATCCGTGTCCATATCCGACCCG
GGAAGCGGAATTGGAAGAGGG