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Detailed information on CNT30212259


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 3e-145

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640134Helianthus annuusNymphaea colorata34.6333.5881.82231forward
CNT30547410Helianthus annuusIpomoea triloba30.8838.7983.5206forward
CNT30512774Helianthus annuusJuglans regia46.782581.73312forward
CNT30373037Helianthus annuusArabidopsis thaliana69.1222.6381.34461forward
CNT3071371Helianthus annuusQuercus suber30.4370.7385.22203forward
CNT30405832Helianthus annuusBeta vulgaris30.1325.0684.08201forward
CNT30636551Helianthus annuusCapsicum annuum30.4330.7686.7203forward
CNT30192963Helianthus annuusSecale cereale32.3840.4581.02216forward
CNT30223922Helianthus annuusHordeum vulgare11.9928.889080forward
CNT30543621Helianthus annuusBrassica napus20.5453.5284.67137forward
CNT30510528Helianthus annuusSolanum lycopersicum55.6228.884.91371forward
CNT30312884Helianthus annuusCamelina sativa92.9561.3381.45620forward
CNT30263621Helianthus annuusBrassica rapa47.0826.5482.48314forward
CNT30612508Helianthus annuusArabis alpina95.225.0280.79635forward
CNT30446140Helianthus annuusSaccharum spontaneum96.152.2479.25641forward
CNT301916Helianthus annuusZea mays29.9949.1480200forward
CNT30716253Helianthus annuusMalus domestica golden94.947.7482.94633forward
CNT30361348Helianthus annuusSorghum bicolor67.0284.9878.3447forward
CNT30705326Helianthus annuusPrunus avium31.1816.1986.06208forward
CNT30557952Helianthus annuusPanicum hallii22.4918.483.33150forward

Expression of CNT30212259

Peptides detected in this lncRNA

>peptide 1 (49 aa)
GSKKFSPQSLSIIFASSTPNFEAYIFAKLVKVKAQPCNPAEKATVPFSG*

>peptide 2 (32 aa)
LGRKSSHPRAFPSSSPHQHQTSKHTFSQSWSK*

>peptide 3 (37 aa)
WVEKVLTPEPFHHLRLINTKLRSIHFRKVGQSKSPTV*

Sequence

>CNT30212259
TTGGGTCGAAAAAGTTCTCACCCCAGAGCCTTTCCATCATCTTCGCCTCATCAACACCAAACTTCGAAGCATACATTTTCGCAAAGTTGGTCAAAGTAAA
AGCCCAACCGTGTAACCCAGCAGAGAAAGCAACGGTACCTTTCTCAGGGTAAACCATGACATCACCGAGAAGCGGGTCCTCATAAGTAGCCATGATGACA
TTAGCGTTTTCGATAACCCTTTGAAACGTCTGGTATGCTTCTTCTCCATCAACTTGAAGCTCAAGGAAACAACGGTCCATTTTGTTGACGGTCAACACGG
GTCGAATCCTTTCACCGAGAGCTTGACGAAGGACGGTTTCGGTCTGGACGCAGACACCTTCGATACAATCAACAACCACCAATGCACCGTCAGTGATACG
GAGTGCAGCAGTAACTTCGGATGAGAAGTCAACGTGCCCGGGTGAGTCAATGAGATTGATGAGGTACTCATTCCCGTTACGTTCTCCTTTAAAGCTCTTG
AGAGCCTCATCAGTCATTTCATAGTAAAGTGATATCCCAGTTGACTTGATCGTGATACCGCGTTCAGCTTCATCAGCACGTGTATCGGTCATTCGTACAT
CACCAGCAACTTCTTGTGCGATAATACCAGCAGCAGCCACAAGAGAGTCGGTCAACGTTGACTTCCC