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Detailed information on CNT30212158


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42699|METE_CATRO, E-value = 8e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30563287Helianthus annuusActinidia chinensis23.9120.0486.0293forward
CNT30555770Helianthus annuusOryza glaberrima25.9626.7982.18101forward
CNT30312681Helianthus annuusCamelina sativa16.7121.4587.6965forward
CNT30129112Helianthus annuusCorymbia citriodora25.9627.1584.16101forward
CNT30358925Helianthus annuusLactuca sativa76.6178.0187.92298forward
CNT30104583Helianthus annuusOryza rufipogon22.1140.5783.7286forward
CNT30578457Helianthus annuusOryza barthii25.9617.8182.18101forward
CNT30604899Helianthus annuusOryza punctata14.6524.4687.7257forward
CNT30333329Helianthus annuusCynara cardunculus71.4757.4491.73278forward

Expression of CNT30212158

Peptides detected in this lncRNA

>peptide 1 (55 aa)
LPTTASRDSRTLRDAARSLAQMFLPSTTPAKRYLPDGKLVLIKSRVCSPRTKSKV*

>peptide 2 (35 aa)
FADNGLKRLEDFKRCCKVVSPDVSSINNTSEEVFA*

Sequence

>CNT30212158
CTTTGCCGACAACGGCCTCAAGAGACTCGAGGACTTTAAGAGATGCTGCAAGGTCGTTAGCCCAGATGTTTCTTCCATCAACAACACCAGCGAAGAGGTA
TTTGCCTGATGGGAAGCTGGTCTTGATTAAATCAAGAGTCTGTTCACCACGGACCAAATCGAAAGTGTAACCGGCGACTCCGGGCAAGGTGGTTAGGGTT
TTGAATGCATCAGCAGGAATATCAGCAAAGTAGGTGGCAACAAGGACATTAAGACCGGAGCAAGCTGATTCAAGATCTGCGTAAGCCTTGGTGAAAGCTT
GCAATTGGTGGGCCTCAAGATCCTTCACAAGGGTAGCTTCATCAAACTGGATCCATGTTGCACCAGCTTCCTTCAACTCAGCAATAACC