CANTATAdb - search

Detailed information on CNT302119

BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 7e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30297782	Zea mays	Triticum aestivum	50.09	61.44	94.48	290	forward
CNT30249341	Zea mays	Avena sativa	56.48	54.05	92.66	327	forward
CNT30666088	Zea mays	Triticum dicoccoides	56.48	40.77	92.05	327	forward
CNT30579578	Zea mays	Echinochloa crusgalli	64.42	45.32	88.74	373	forward

Expression of CNT302119

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MHISNHATTVPAAKLQYTVINRRRSSLIWIPAGACGVREV*

>peptide 2 (34 aa)
NIRRDLVIKLHKDHHAHLKSCHHRTSSQITIYCN*

>peptide 3 (32 aa)
YKKRLGNKITQGSSCTSQIMPPPYQQPNYNIL*

Sequence

>CNT302119
AATATAAGAAGAGACTTGGTAATAAAATTACACAAGGATCATCATGCACATCTCAAATCATGCCACCACCGTACCAGCAGCCAAATTACAATATACTGTA
ATTAATAGAAGAAGAAGTTCTTTAATTTGGATCCCGGCTGGGGCGTGCGGCGTACGTGAAGTGTGATTAGTCGAAGGTGGCCTTGCCGGTGAACTTGACG
TCGATGGGGTTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCGACGCCCTCCCTGCCGGGGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGA
GGCACTGCTCCTTGCGCGCCAGCTTCAAGAGGTTGGGGCCCTCCCGCATGATGGCGGCGCCGCCGGTGGGCATCTCGAACACCTGCTCCTTGGGGGACGT
CCACGTGATGACGTAGAACTCCTCCACCTGCGCCTTGCGGAGCAGCCCGCCCGTGCTGCCGCCGAAGATCGGGGACGGCGTGCTGGGGTCCAGCTGCGGG
GCCACGAACCCCTTGGGCGCCTCCACCGCCTCCTCGGTGGACGCGCGGAGCGGGGCCGGCCCGCGGGAGGACGACGACG