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Detailed information on CNT3021173


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C7S5|PSYR1_ARATH, E-value = 4e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30559962Citrullus lanatusActinidia chinensis47.0856.5979.35339forward
CNT30686777Citrullus lanatusTriticum urartu25.5626.7179.35184forward
CNT30704500Citrullus lanatusPrunus avium44.868.284.21323forward

Expression of CNT3021173

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHRHPSHATSNLNFRFPCMNTLVADCPHVHSNLEA*

>peptide 2 (49 aa)
MSLVRIDQSRKSKICYMSFKFLIEQDVTGLNITVYNMWLAYLVHVGQSS*

>peptide 3 (46 aa)
MYTVTLKRNQVLVFGCRKSLYFCFKFPFHQSQISREFLHSKSRPIC*

>peptide 4 (55 aa)
SFLSCCTQPTNSRDAFGFDISTGLLPVSNSSTTTPKLYISPLKVATHACPYSGGI*

Sequence

>CNT3021173
CCTCATTTCTCAGTTGTTGCACCCAGCCAACCAACTCTCGTGATGCCTTTGGCTTTGATATCTCTACAGGTCTTTTGCCAGTAAGCAACTCGAGCACGAC
AACACCAAAGCTATACATATCTCCTCTCAAAGTGGCAACCCATGCTTGTCCATACTCTGGAGGAATATAGCCCAAGGTGCCAACAAGTTCGGTTGTAACA
TGAGTCTGGTAAGGATTGATCAATCTAGAAAGTCCAAAATCTGCTACATGAGCTTCAAATTTCTCATCGAGCAGGATGTTACTGGACTTAATATCACGGT
GTACAATATGTGGCTCGCATATTTGGTGCATGTAGGCCAATCAAGTTGAGATGCACCGTCATCCTTCTCATGCAACCAGTAATCTAAACTTCCGTTTTCC
ATGTATGAATACATTAGTAGCCGACTGCCCTCATGTACACAGTAACCTTGAAGCGTAACCAGGTTCTTGTGTTTGGCTGCAGAAAGAGCCTCTACTTCTG
CTTTAAATTCCCTTTCCATCAGTCCCAAATCTCCCGAGAGTTTCTTCACAGCAAGTCTCGTCCCATTTGCTAATGTTGCCTTGTAAACCAATCCGAAACC
ACCGCAGCCAATTATGTTTTCTTGATTGAAATCATCAGTGGCCTTCAATATGTCAGAAATGGTAAGCTCCTTGATGTTGTTGGCATTATTTGGAAACAAA
ATGACTATGCTAGTGTTGTT