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Detailed information on CNT30211728


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Helianthus annuusSetaria viridis73.4830.7482.99194forward
CNT30521178Helianthus annuusSetaria italica29.1715.7587.0177forward
CNT30513228Helianthus annuusJuglans regia79.5526.9982.86210forward
CNT30375849Helianthus annuusArabidopsis thaliana51.1412.0585.19135forward
CNT30403349Helianthus annuusBeta vulgaris42.0531.985.59111forward
CNT30504596Helianthus annuusNicotiana attenuata20.088.6290.5753forward
CNT30249492Helianthus annuusAvena sativa29.1722.5887.0177forward
CNT30282Helianthus annuusZea mays27.6524.0184.9373forward
CNT30650401Helianthus annuusRosa chinensis74.6222.3680.71197forward
CNT30721247Helianthus annuusTriticum spelta49.6224.9582.44131forward
CNT30367469Helianthus annuusSorghum bicolor79.1729.9983.25209forward
CNT3027382Helianthus annuusPopulus trichocarpa46.2125.2184.43122forward
CNT30148668Helianthus annuusBrachypodium distachyon35.9831.1583.1695forward
CNT30118099Helianthus annuusOryza nivara79.1725.6481.34209forward

Expression of CNT30211728

Peptides detected in this lncRNA

>peptide 1 (86 aa)
ILTGLEPAVGIHPQDIGFQNRKHFVDSVVNFLGGWNSWGVDVIDTGTDSSTVLDSLTEHGEQLLIRSGVLHERAHQCQVLLEVGQL*

Sequence

>CNT30211728
CATACTTACGGGTCTTGAGCCCGCAGTCGGGATTCACCCACAAGATATTGGTTTCCAAAACCGCAAGCATTTTGTTGATTCTGTCGTGAATTTCCTCGGT
GGATGGAATTCTTGGGGAGTGGATGTCATAGACACCGGGACCGATTCCAGCACCGTACTTGACTCCCTCACGGAACACGGAGAGCAACTTCTCATCAGAT
CTGGAGTTCTCCATGAACGAGCACATCAATGTCAAGTTCTTCTTGAAGTTGGACAACTTTGAAG