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Detailed information on CNT3021172


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 2e-120

BLAST vs NONCODE:
NONBNAT001751, E-value = 9e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525464Citrullus lanatusPhaseolus vulgaris77.3371.8685.71406forward
CNT30629544Citrullus lanatusVigna unguiculata75.4352.3887.63396forward
CNT30147611Citrullus lanatusBrachypodium distachyon35.2430.8387.57185forward
CNT30100761Citrullus lanatusOryza rufipogon67.4361.7884.18354forward

Expression of CNT3021172

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVHLNRLYFSSQSSWGKGDNHTGLDNTSFHTTHWNSSNTTNLVDILKWKTKGFV*

>peptide 2 (45 aa)
KFDCNVRGVAVEDRSIAISNLPWMVHDNNLGSEIGSFLSRVILGI*

Sequence

>CNT3021172
GCAAATTTGACTGCAATGTGAGAGGTGTGGCAGTCGAGGACAGGAGCATAGCCATTTCCAATCTGCCCTGGATGGTTCATGATAATAACTTGGGAAGTGA
AATTGGCAGCTTCCTTAGCAGGGTCATCCTTGGAATTTGAGGCAACGTAACCACGCTTGAGATCCTTCACAGCAACATTCTTCACGTTGAACCCCACATT
ATCACCAGGGAGAGCTTCTTGGAGAGCTTCATGGTGCATCTCAACAGACTTTACTTCAGTAGTCAGTCCAGTTGGGGCAAAGGTGACAACCATACCGGGC
TTGATAATACCAGTTTCCACACGACCCACTGGAACAGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGAAGACGAAGGGGTTTGTCTGATGGTC
TCTTAGGCTCTTGGATCAGGTCAAGGGCCTCAAGAAGGGTTGGTCCCTTGTACCAGTCGAGGTTTGTGGATCTTTCAATCATGTTGTCACCCTCAAATCC
AGAGATGGGGACGAAGGGAATTTTG