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Detailed information on CNT30210701


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269818Helianthus annuusChenopodium quinoa17.7945.4882.05156forward
CNT30380061Helianthus annuusManihot esculenta11.7427.3283.5103forward
CNT30544306Helianthus annuusBrassica napus11.2928.3783.8499forward
CNT30216944Helianthus annuusKalanchoe fedtschenkoi21.8927.2781.77192forward
CNT30479805Helianthus annuusArabidopsis halleri10.8331.2586.3295forward
CNT30356872Helianthus annuusLactuca sativa25.5438.6289.73224forward
CNT30481599Helianthus annuusChara braunii11.422.5283100forward
CNT3039554Helianthus annuusMarchantia polymorpha20.0748.0982.39176forward

Expression of CNT30210701

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MKNANMENIASLPFLISLTFNSANWSGSLARPNGVAQVRCKVLNRTLSGHIRLDEECKHGEHS*

>peptide 2 (38 aa)
MKNANMENIASLPFLISLTFNSANWSGSLARPNGSNGPP

Sequence

>CNT30210701
CACAAATTTATTTAAGTGTTTAGTTTTTTTATTCTGTTAATTTTAACTTCCAAGATTTGGTCTTATAAAAGAAGAATTGGTAATGTACTTCATCTATTCT
CAAATAGTATTAATTTCCTATCAATTAAGAGTGTGTTTCTAAATTCAATGTTATGTTTCAGTTCTGAATGTTTATATAACCTAGCCCAAGTCTGTCACCA
TATTGGTCAAATTTCAGCCTGGCTACTGTGACAATGTGACATGAAAAGATAGTCTCATGTTATCTATAAGACTGGTGCATCCTTGAATCTTATTAGGCAG
GTGCTTAAAGACCATTGTAGTCTTTTAAGTTATATACTTATATGTAAACCCTGATGCAAATATGACAAGTTACAACCTTAAACACGACTCTTGCAATTAT
TGAACCGTTTCTCATAGTAACAGAATATATAAAGTACACGAACATCTGAATGTCATTGTTTTAGAGCACAAAAGGTTGTTTACAGGGTTGGGACTCGTTC
GATGTTTCCAGAAATGACGGTTAGCAAGTTGTTTCCAAAGGGGTCGCTCAAGTGAGACGCAAGGTTCTCAACAGGACCTTGTCCGGTCACATACGCTTGG
ATGAAGAATGCAAACATGGAGAACATAGCTAGTCTACCATTCTTGATCTCCTTAACCTTCAATAGTGCAAACTGGTCTGGGTCCTTAGCCAGACCCAATG
GGGTCGCTCAAGTGAGATGCAAGGTTCTCAACAGGACCTTGTCCGGTCACATACGCTTGGATGAAGAATGCAAACATGGAGAACATAGCTAGTCTACCAT
TCTTGATCTCCTTAACCTTCAATAGTGCAAACTGGTCCGGGTCCTTAGCCAGACCCAATGGGTCAAACGGTCCACCA