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Detailed information on CNT30210175


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 1e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619448Helianthus annuusSesamum indicum35.1111.696.97132forward
CNT30197509Helianthus annuusPisum sativum64.3610.6395.45242forward
CNT30182368Helianthus annuusSecale cereale97.3418.0592.9366forward
CNT30299594Helianthus annuusTriticum aestivum97.3448.4192.9366forward
CNT30220864Helianthus annuusHordeum vulgare64.3617.9794.63242forward
CNT30388738Helianthus annuusTriticum turgidum97.3456.6692.9366forward
CNT30586133Helianthus annuusMusa acuminata60.3710.2789.87227forward
CNT30437984Helianthus annuusAegilops tauschii70.2169.8490.53264forward
CNT30467405Helianthus annuusSaccharum spontaneum97.3422.5892.9366forward
CNT30627916Helianthus annuusDaucus carota64.366.7196.69242forward
CNT30427311Helianthus annuusPapaver somniferum98.410.0593.78370forward
CNT30574574Helianthus annuusVitis vinifera64.367.1997.11242forward
CNT3056795Helianthus annuusAmborella trichopoda99.7370.4990.4375forward
CNT30104639Helianthus annuusOryza rufipogon64.3622.0495.04242forward
CNT30577102Helianthus annuusOryza barthii25.842.7391.7597forward
CNT30115468Helianthus annuusOryza nivara95.4810.493.04359forward

Expression of CNT30210175

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LIIKTTHYPNERRSIIYPKKIESPTYEKRS*

>peptide 2 (31 aa)
MCTRYHKGPISQQHLCLKLQMKLHIRNAGTI*

>peptide 3 (34 aa)
MINKSTLKLTYLLGQSSECVRDTIRAQYLNSTFV*

Sequence

>CNT30210175
ACTTATTATAAAAACAACTCACTATCCAAATGAAAGACGATCGATTATCTACCCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCATAAATAGAG
TTGAACCAAGTAACATTGCAAAGGCGTAATGATAAACAAATCCACTTTGAAGTTGACTTATTTGCTCGGTCAATCGTCGGAATGTGTACGAGATACCATA
AGGGCCCAATATCTCAACAGCACCTTTGTCTAAAGCTTCAAATGAAACTTCATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATTAAAAACTTGA
TCGAAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCAATTACAAAAAGTAATAGTTTGAAAGGCTCGTTGGAATT