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Detailed information on CNT3020986


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674625Citrullus lanatusSetaria viridis9.0429.5885.7184forward
CNT30300733Citrullus lanatusTriticum aestivum13.8961.7284.5129forward
CNT30220567Citrullus lanatusHordeum vulgare13.8956.3382.95129forward
CNT30434591Citrullus lanatusPapaver somniferum13.8950.1985.27129reverse complement
CNT30148338Citrullus lanatusBrachypodium distachyon13.8931.4683.72129forward
CNT30102868Citrullus lanatusOryza rufipogon11.346.8883.81105forward

Expression of CNT3020986

Peptides detected in this lncRNA

>peptide 1 (35 aa)
FIINKFFLICVQVKKRKRKRKINFSFFSLVQPCEA*

Sequence

>CNT3020986
GTTTTATTATAAATAAATTCTTCTTGATTTGCGTGCAGGTAAAAAAAAGAAAACGAAAAAGGAAAATTAATTTCTCCTTCTTCTCCCTCGTGCAGCCGTG
TGAAGCTTGAAGTCGCCGCAGCTCTCTCTCTCCCTCGATCCGGACGTCGGCCACCGCCAGCACCCCTTCGCCACTCACGCCGCCGGACGTCGTCCTCCAT
CAACCGTTCGCAGCCGCCGTCGAGATCACGCAGACGCAGCACCGCCGCCCGAAGCTCAGTCCGTTGCCGCCATCAACTAGTCGCTCGTCGCTCCGTCAGT
CTAGCGTCGCTGCCGTCAGCGAGCTGCAGTTTCCGCCGCTGTCGAGCAGGGTTCCGCCGTGTGGGTTGTCTCCGGTGGACAGTAGTGTTGTCAGTCGCCG
CCAGCACTTGAGATTTGCCGAATTCTTGGGTATTGGGTAAAGGCTCTGACGAATGACAAGAAGAATCCTTGAAGGCGTTATGGGACCCAAAGTAACTTCC
GCATAGTTTCATATTTTAAATTGGTCTTTGATGTCTAAACTGTTTGAATTCATTTTGAGATACGTTGTTGTGGTTTTCTTTAGGGGTAACTCGAACTAGG
GATTTTTTTTTATTTTGTTGAGCTTATGTTTTAAATCAATCTTAGTTTTCCACGAAGATCAAGTTCACTTCATCTATTTTGTGAAGAGTCATTTCAAAGT
TGAGCATGCATCGAGTAATTATTCGGTTAGTGAGTTTGATTAGTCGGGTTGTTACACTCTTGCTTGCCCATGGATTCACAGCAGTTTGACAGGTTGACCT
AAGCATTTCATCACTTACTACGCTCTTCCTCATCTATGGGTGCTTAGGTATCCACTGTAAGCCTTTCTTCGTTTGAACATCGCCCTTATTTTTAAGGTTA
TGACATCCTAAGGTATTGCTAAATGGAAG