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Detailed information on CNT30209470


BLAST search results

BLAST vs Swiss-Prot:
sp|P49310|GRP1_SINAL, E-value = 2e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3023278Helianthus annuusPopulus trichocarpa20.6115.1284.21114forward

Expression of CNT30209470

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDKNCIMKYHKINRSIVCLWKEKRMNVPF*

>peptide 2 (36 aa)
KLWPFIPSIASLKDCSSLKVTKPNPLDLPVSRSLMI*

>peptide 3 (52 aa)
MDPNPNFATNGPSNRGLRRIDGTRLQVSGQLWPMRGHRRNICTQRQRKPFVD*

Sequence

>CNT30209470
CTAAACTCTGGCCGTTCATCCCTTCAATAGCGTCCCTCAAAGATTGTTCGTCTTTGAAGGTAACGAAACCGAATCCTCTAGATCTGCCAGTCTCCCGATC
ATTGATGATCTGAACAATAACAAAATTAAGTTTAAGTTAATCTAGTAAACACTTGTATATAAATATGGACAAAAACTGCATTATGAAATATCATAAAATC
AATCGATCGATCGTCTGTCTCTGGAAAGAGAAGAGGATGAACGTACCGTTTTAGATATGAGTAAAAGTAGTAACAGTAATAGTAACAGATCAAGTAAACC
ATAGTAACAGTAACAGTAACACAGTAACATGTGATTTGTCAAACAAAGCCGAATCAGGATGGATCCGAATCCGAACTTTGCGACAAACGGACCTTCGAAT
CGAGGACTTCGCCGTATTGACGGAACGCGTCTTCAAGTGAGCGGTCAGTTGTGGCCCATGCGAGGCCACCGACGAAACATCTGTACTCAACGTCAGCGGA
AGCCATTTGTGGATTGAGAGGATGCTTAAAGATAACAGGAGAAAGGGGTGAGG