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Detailed information on CNT3020926


BLAST search results

BLAST vs Swiss-Prot:
sp|P48352|CATA3_CUCPE, E-value = 2e-161

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692523Citrullus lanatusOryza sativa37.8822.3487.12264forward
CNT30519701Citrullus lanatusSetaria italica42.4721.7881.42296forward
CNT30185311Citrullus lanatusSecale cereale38.3118.9882.4267forward
CNT30298786Citrullus lanatusTriticum aestivum17.546.5683.61122forward
CNT30238041Citrullus lanatusBrassica oleracea24.5322.579.53171forward
CNT30139766Citrullus lanatusLolium perenne37.353.0680.38260forward
CNT301996Citrullus lanatusZea mays16.0725.6984.82112forward
CNT30347748Citrullus lanatusEragrostis tef45.4845.4880.13317forward
CNT30369978Citrullus lanatusOryza glumipatula37.8835.1586.74264forward
CNT3037432Citrullus lanatusCucumis melo35.8762.3494250forward
CNT30575497Citrullus lanatusOryza barthii25.8214.3588.33180forward

Expression of CNT3020926

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MTVEKRTMTGVWTPGARRKSAQVRSEMSWVTSKNPLALAPRAWTTRSGIRSRVKVAIFSMS*

>peptide 2 (59 aa)
VPPAATVSHPQAKRWWYLTVQNHSCFGPRNQWSEYKVSTQGNSQPQWTRTSPELRDYGC*

>peptide 3 (65 aa)
MVVDWDAHVIVEPSERQKAFRMVRAEIQESPWLLEVGFWVGFEGTDDVGELHCVTYEEYGEVVAH*

Sequence

>CNT3020926
GTCCCACCGGCTGCAACGGTATCACATCCTCAGGCCAAGCGATGGTGGTATCTAACGGTTCAAAATCATAGTTGTTTTGGTCCTCGTAATCAATGGTCTG
AATATAAAGTCTCCACTCAGGGAAATTCCCAGCCGCAATGGACTCGTACAAGTCCTGAGTTGCGTGACTATGGTTGTTGATTGGGATGCCCACGTCATCG
TAGAACCAAGCGAAAGACAGAAGGCTTTCCGGATGGTAAGAGCAGAAATCCAGGAATCTCCATGGCTCTTGGAGGTGGGATTTTGGGTTGGGTTTGAAGG
CACGGATGACGTCGGGGAATTGCATTGCGTCACGTACGAAGAATACGGGGAAGTTGTTGCCCACTAAGTCGAAGTTGCCTTCACGTGTGTAGAATTTGAC
GGCGAATCCACGGGGGTCACGGAGGGTTTCGGGGCTGCCGCGCTCGTGGATGACGGTGGAGAAACGGACGATGACGGGGGTTTGGACGCCGGGGGCACGG
AGGAAGTCGGCGCAGGTTAGGTCGGAGATGTCGTGGGTTACTTCGAAGAACCCCTTGGCGCTGGCTCCTCGGGCGTGGACTACTCGCTCGGGGATTCGCT
CGCGGGTGAAGGTCGCGATTTTTTCGATGAGTTGATAGTCTTCTAACAGGATTGGGCCTCGTTCTCCGACGGACATCACGGCGGTGTTGTTCCATAC