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Detailed information on CNT3020910


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MTK5|PSBE_OENEH, E-value = 2e-30

BLAST vs NONCODE:
NONVVIT001182, E-value = 1e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202349Citrullus lanatusPisum sativum30.634.7194.1268forward
CNT30491981Citrullus lanatusOlea europaea27.032.7996.6760forward
CNT30286499Citrullus lanatusTriticum aestivum100.917.2685.71224forward
CNT30221820Citrullus lanatusHordeum vulgare23.872.6988.6853reverse complement
CNT30553971Citrullus lanatusOryza glaberrima27.939.5495.1662forward
CNT30666971Citrullus lanatusTriticum dicoccoides63.0654.988.57140forward
CNT30355329Citrullus lanatusLactuca sativa100.931.5588.84224forward
CNT3025537Citrullus lanatusPopulus trichocarpa31.0817.2994.269forward
CNT30149874Citrullus lanatusBrachypodium distachyon31.085.3595.6569forward
CNT30574605Citrullus lanatusOryza barthii63.068.2387.86140forward
CNT30117202Citrullus lanatusOryza nivara100.912.0286.61224forward

Expression of CNT3020910

Peptides detected in this lncRNA

>peptide 1 (38 aa)
CVLNSSSCSKESKRPVINGIPCRLSVKYSFGRGLPKTS*

Sequence

>CNT3020910
ATGTGTTCTAAATTCATCGAGTTGTTCCAAAGAATCAAAACGGCCAGTTATTAATGGAATTCCTTGTCGGCTCTCTGTAAAATACTCATTTGGACGAGGG
CTTCCAAAAACATCGTAAGCTAAACCCGTGCTGACGAATAACCAACCTGGTTAGGTATAATAATGCTATGAATGACCCAGTATCGAATACTGGTGATAAT
ATCAGCAAAAGAACGTTCTCCG