Detailed information on CNT3020893


BLAST search results

BLAST vs Swiss-Prot:
sp|Q04716|RT03_PETHY, E-value = 3e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223517Citrullus lanatusHordeum vulgare20.3599.1293.51339forward
CNT3016498Citrullus lanatusZea mays5.7621.2495.8396forward
CNT30479543Citrullus lanatusArabidopsis halleri6.8421.9291.23114forward
CNT3054921Citrullus lanatusAmborella trichopoda14.7770.0988.62246forward
CNT30575777Citrullus lanatusOryza barthii5.8234.488.6697forward
CNT30175657Citrullus lanatusVigna angularis16.5157.7792.36275forward
CNT30336644Citrullus lanatusCynara cardunculus39.4443.6590.26657forward

Expression of CNT3020893

Peptides detected in this lncRNA

>peptide 1 (80 aa)
ANVAACRAFDKLTPSISNGICPVDTQAIQPVGFPFPLPILTSVGFPVIGRFARTLTHIVPFLWNCSIIARCAASMARYER*

>peptide 2 (41 aa)
MISIIISIPFINSPIPPRSMNFSINSITLSLPMRFQHLILN*

>peptide 3 (47 aa)
MIENYDGEEEVIYCRTFNVEIVLEIRCWLVLLRSIYIFFFIQTDFSR*

>peptide 4 (40 aa)
MTSSTTFSAISSKTKLCIVRFATPTTSAFTIFTIFRTFRI*

>peptide 5 (71 aa)
MVVFVVPAKRRSFAWRMKWVNLFLASAKHFFSLVELSTKKAMRERILLSKLLPCVFAPPIVDGSATPGATK*

Sequence

>CNT3020893
GCTAATGTAGCAGCTTGTCGAGCATTTGACAAACTCACACCATCCATTTCAAATGGGATTTGTCCCGTGGACACACAAGCAATCCAACCCGTAGGATTTC
CTTTTCCTCTTCCCATTCTGACTTCTGTAGGTTTCCCGGTAATAGGGAGATTTGCCAGAACTCTTACCCATATTGTACCATTTCTTTGGAATTGTTCGAT
TATAGCCCGATGCGCAGCTTCAATGGCTCGATATGAAAGATGACCAGCTCTACAACTTTTAGTGCCATATCTTCCAAAACCAAGTTGTGTATCGTTCGGT
TTGCAACCCCTACTACATCTGCCTTTACAATATTTACTATATTTCGTACGTTTCGGATATAACACGTTCCCCCTTATTTATTTATTTATTTTATATTTTA
TACAACGAGTAGATACTTCCGCAGGAGCATAATCGATTTTCTGGTTAAATACATTACGAGATGTTTTTCCATACTTTCCGCATTCAGTTCTAGCTATTTC
CGCGCCTTCTGATCGACCTGAACAACATATACGGATCCCCTCAACCCCTTTTTTCATTACTAATGGAATATCCTTCACTATTTTACTAAAAATGGAACGA
AATGATCTTGTTTTGTTTCTCAGTTGAAAAGAGATGTCTTGAGCAATCGGAGAAGCACTTTGATAAACAGATTTGATCTTGACTGACTCAATTAAGGTAT
TAGTCTTTGTTCTATTAGACAACAAAGATCGCATTTTTTTCACTTCGTTCAAATAAGAGTTGTACCCATACGGAATTCTTCTGTTTCTCAGTATGATCTC
TATCATCATCTCTATTCCCTTTATCAATTCTCCTATCCCACCTAGGTCTATGAATTTCTCTATCAATTCTATTACCTTATCCTTACCCATGAGGTTCCAA
CATTTGATCCTTAATTGACCTAGGAGTTGTTCCCGGGTATCCTCAAAAAAAAGGTTTTTATACATCCCAACCCCATCCCTTGGAAAGAAAAAGGTAGCAC
CGAAGAAAGGAAAGAGCGAGATGGTTGTTTTTGTTGTTCCCGCGAAACGAAGATCATTCGCTTGGCGAATGAAGTGGGTCAACCTCTTTTTGGCTTCGGC
CAAACACTTTTTCTCGCTGGTCGAGCTTTCTACAAAAAAAGCGATGCGAGAACGTATTCTCTTATCTAAGCTTCTTCCCTGTGTATTCGCTCCCCCCATC
GTAGATGGTTCAGCCACGCCCGGTGCCACGAAATGATTGAGAACTACGATGGGGAAGAGGAAGTTATTTATTGCAGAACTTTTAATGTGGAGATAGTGCT
TGAAATTAGATGTTGGCTCGTATTGCTAAGATCAATATATATATTCTTTTTCATACAGACTGATTTCTCTCGGTAAATATATACACATTATTTAACTAAC
GGATTAGTTTGGCTATAAGTAATTTGAACCTTGGTTGGAAATCTTAAATCGATTTTGAATCTCTAATGAAAATTTAAAATCAAACTGCAATTATTGTATT
GAGTCATAATTAATGGTAACCGACCACTTGATGTATTCATCATTCAGACGACAATTTTTATGTTATCTTTTGTGCACCTGATTTATGCAAACTGTGGCTG
AGACTTTAAATTCTAATGTCAAGCGACATGTTTACAAGTACAGTGGCAAACTTGAACCAGTTATTT