Detailed information on CNT302080


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 2e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695575Zea maysOryza sativa61.2140.0693.89262forward
CNT30377112Zea maysArabidopsis thaliana23.3615.7282100forward
CNT30525887Zea maysPhaseolus vulgaris20.7923.885.3989forward
CNT30664930Zea maysTriticum dicoccoides51.8769.1687.39222forward
CNT30358483Zea maysLactuca sativa34.8122.7883.22149forward
CNT3035037Zea maysCucumis melo20.5629.3384.0988forward

Expression of CNT302080

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MGLTFLPMLRKFWPTPSLPGLGPSRMMAAPPVGISNTCSLGDVHVMT*

>peptide 2 (40 aa)
MHISNHATTVPAAKLQYTVINRRRSSLIWIPAGACGVREV*

Sequence

>CNT302080
CATGCACATCTCAAATCATGCCACCACCGTACCAGCAGCCAAATTACAATATACTGTAATTAATAGAAGAAGAAGTTCTTTAATTTGGATCCCGGCTGGG
GCGTGCGGCGTACGTGAAGTGTGATTAGTCGAAGGTGGCCTTGCCGGTGAACTTGACGTCGATGGGGTTGACGTTCTTGCCGATGCTGCGGAAGTTCTGG
CCGACGCCCTCCCTGCCGGGGTTGGGGCCCTCCCGCATGATGGCGGCGCCGCCGGTGGGCATCTCGAACACCTGCTCCTTGGGGGACGTCCACGTGATGA
CGTAGAACTCCTCCACCTGCGCCTTGCGGAGCAGCCCGCCCGTGCTGCCGCCGAAGATCGGGGACGGCGTGCTGGGGTCCAGCTGCGGGGCCACGAACCC
CTTGGGCGCCTCCACCGCCTCCTCGGTG