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Detailed information on CNT30207841


BLAST search results

BLAST vs Swiss-Prot:
sp|P92544|M1130_ARATH, E-value = 4e-15

BLAST vs NONCODE:
NONMTRT002185, E-value = 1e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Helianthus annuusOryza sativa22.8822.2389.56613forward
CNT30523685Helianthus annuusSetaria italica7.7657.7884.62208forward
CNT30549210Helianthus annuusIpomoea triloba27.4462.1891.02735forward
CNT30501657Helianthus annuusCoffea canephora36.6619.9892.67982forward
CNT30187493Helianthus annuusSecale cereale16.5497.5890.52443forward
CNT30220028Helianthus annuusHordeum vulgare16.4632.7681.63441forward
CNT30401101Helianthus annuusTriticum turgidum21.847.9989.73584forward
CNT30592607Helianthus annuusMusa acuminata3.4321.788.0492forward
CNT30437037Helianthus annuusAegilops tauschii10.6482.3795.44285forward
CNT30664530Helianthus annuusTriticum dicoccoides13.81103.3589.46370forward
CNT30598800Helianthus annuusFraxinus excelsior13.2995.795.51356forward
CNT30228621Helianthus annuusAnanas comosus12.3279.3387.88330reverse complement
CNT30687453Helianthus annuusTriticum urartu20.4610.2589.05548forward
CNT30480890Helianthus annuusArabidopsis halleri12.0296.793.48322forward
CNT30354619Helianthus annuusLactuca sativa34.5755.5894.92926forward
CNT30154898Helianthus annuusPrunus persica23.962.6788.01642reverse complement
CNT30574571Helianthus annuusVitis vinifera37.9616.5386.231017forward
CNT3056169Helianthus annuusAmborella trichopoda10.4977.291.46281forward
CNT30100050Helianthus annuusOryza rufipogon8.1449.5589.45218reverse complement
CNT30495778Helianthus annuusDigitaria exilis14.0489.9581.65376forward
CNT30115707Helianthus annuusOryza nivara22.8814.0789.56613forward
CNT30175599Helianthus annuusVigna angularis27.4445.5488.16735reverse complement
CNT30557320Helianthus annuusPanicum hallii14.4887.3989.69388forward
CNT30335348Helianthus annuusCynara cardunculus13.74101.6696.47368forward
CNT30724464Helianthus annuusLupinus angustifolius5.2633.5788.65141reverse complement

Expression of CNT30207841

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MKSALPHLLLSKSETLLNKKSPFYLLSKALTRALQSNSSFALIDTTTLLIERVKMRSSNLSY*

>peptide 2 (53 aa)
MGRPILGILKKKEREHNHFLSVTYLIRLNRILRAVTIIHIPFSRQEGRGSYRF*

>peptide 3 (54 aa)
MVIISYFFSSSSSSINKKAIMDQDPKGSIFYTDVSYSLDQVIIRNAMQNLSEVL*

>peptide 4 (65 aa)
MKKKFKDHAAPAKARKAAMIAVKVLMNSLNMSWFFCPYSLFHLRRNIALGYFRSHIPPVLLLNLL*

>peptide 5 (30 aa)
MTTSLRSTLPRYCSMEAGGLLEVRPAFFVS*

>peptide 6 (35 aa)
MNRTSTSFVTPPTALTALYPNPTCSGPGSFLSIPR*

>peptide 7 (35 aa)
MTISLELRGPTHISTAHNKNKTNRDFIRDHLSCRS*

Sequence

>CNT30207841
GTGAGTGACTGTTCATCGGAAATAATAAAGAGATACAGAGTATTACTATAAATAAACAACCAATAGATAGAATTAAATAGGCAGAAAGAAGCAATGAAAA
AAAAATTCAAGGACCATGCAGCTCCCGCCAAAGCAAGAAAAGCAGCAATGATAGCAGTTAAAGTTCTGATGAACTCCCTAAACATGAGTTGGTTTTTCTG
TCCTTATTCATTATTTCATTTACGCCGAAATATTGCGCTAGGTTACTTTCGATCTCACATTCCCCCCGTACTACTTCTCAACCTTCTGTGAACATTTCTT
CCTTTAAGCGTAAAACTTCAGATTTTAAGGCCTTTCCACTGCATAAAAAAAACTTGAATGAGATCTACGAAATGATCGACTCAAATAGATGGTTATCATA
AGCTATTTCTTTTCCTCCTCTTCCAGTTCTATTAATAAAAAGGCCATCATGGACCAAGATCCAAAGGGATCAATCTTTTACACCGATGTATCGTACTCTC
TCGACCAGGTCATCATAAGAAATGCAATGCAAAATCTTTCCGAAGTGTTATAAAGAGGGAAGGCGCGCTACAACTAACATAACAGCCTCTTCCTTGCCCC
CCTAAGAATCCAAGGGTGACCTTTGGATGTTGTCGTGACACTTTGGTTACGAAGGTTATCGGGGTCTAGGTTTATGGATGGATTCAGTAATCGAAAGTCC
CTCCAACTCAATCAATATCAACAACATGTCGTGACCGGTTAGGCTTGGTTGATTTTGTCAGAAAAGAAAGTAGGTTTCGGGGGTTCATTGATTAGTACAC
CCCCGGTGCTGGTAAGGTCGGGACCGTGGTCGTACGTCTCCGGTTTGCCGGCCTATCTTCTTTCTGAGATTGACCAGGCAGCTGGGTTGGTTTGGCTATT
CTTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTCATCTTCTTCTAGGCTCCGCTGGACGACACGGCATTCTCGTTTAAATAAATAGATGTCGGCCG
TACTTGTGATGGTTCCCAAGGATCCAATATGACCACTTCACTTAGGTCTACGTTGCCACGATATTGTTCTATGGAAGCGGGCGGGCTGTTAGAAGTTCGG
CCCGCTTTTTTTGTGTCGTAGGGGAGGGATTGACCTTTCTAACGCATATTCAGTCGTACCGGCATGGCCCCACTTATTTATTTTCGATCGGAGCATCCAG
CAGCGCAACCCGGTTCTACTTGACTAAGCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACCCAACCCCCTTTTTGATAACAAGGCAGAAAGCCCCGACC
TGACATTCATTAGTTTCGAATGAAGAGTGCCCTGCCGCACCTACTCCTATCAAAAAGCGAGACTTTACTAAACAAGAAAAGCCCCTTCTATCTTCTTAGT
AAAGCGCTAACGCGCGCCCTGCAATCAAACTCAAGTTTCGCCTTGATCGATACGACAACCTTACTAATAGAAAGGGTCAAAATGCGCTCAAGCAACCTAT
CTTACTAATATAATAATAAGGGCCTATCTAAGCCCTATGGTTGTAAAGCTACAGCTCGAAAGCCGGCCTTACCTTCTATGTTTTTAGTAAAGGGCCTTTT
CAATAAGGCTCGCGCTAGGCGCTCACGTTTTTTGGCTTCCCTAAAATAGCATATTTTTCAGTTGGTAAAGACCCGCCCCTTGTTTCAGTCAGAATGAGTC
CCCGGGACCCCGGGACATTGGCTTCCGCCAACAGTGAACTATTAAGGATCGCATCCCGCGCATATTCTACATTATAGCCTGCAACTGATTCAGCTTCCGC
TTCTGGGAGATCAAACGGAGCTCGATTAGTTTCTGCTAGACAAGAAATAAAGAACATAACCAATACAGGGAACAAGGGAATACCGGACCATATCTGCTTT
TGCGCCATGACAATCTCACTCGAATTACGGGGACCTACACATATTAGTACAGCGCACAATAAGAATAAGACCAATAGAGACTTCATAAGGGACCATTTGA
GCTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGAGTGAAAGTTCCCAACAATCAATGACTTTTTAATTTCCTTATATGAACCGTAC
GAGCACGTCCTTTGTCACCCCCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTGCTCTGGCCCCGGGTCCTTCCTTTCTATTCCTCGGTAAGCG
GACCGTAGGAGCATGGGGTATCTGCTTTTGACTGATAGAAAGCATCTCTCTTTTGTCCCTCCTGACCGAACCCGCAAAAAAAGATAAATAGATCAAGTTT
TTCTTGCCGGGAGAGTTGCGTCGGAGACATCTTTATCTGAAGAGGAGGCTTCGTCGTCCGGCTCCTCATAAATGATGTTAGGATGGGCCGGCCCATCCTC
GGAATCCTAAAAAAAAAAGAGAGGGAACATAATCACTTTCTTTCAGTGACATATCTAATCAGACTGAATAGGATTTTAAGAGCTGTCACGATCATTCACA
TCCCTTTCAGTAGGCAGGAAGGGCGCGGAAGCTACCGTTTCTAGAATGCAAGCAAGCTAGCGACTCTCCTAGTAGCGAAGGAAAGGGGCATTCGGGAAGC
GACTAGTCGCTTCTGGCGAAGCTTCTAGAAGGCCGATCACTACATAGAGAGATCCATATACCAGTCATGAGCGAGAGCG