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Detailed information on CNT3020733


BLAST search results

BLAST vs Swiss-Prot:
sp|P69422|ATP9_VICFA, E-value = 4e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537800Citrullus lanatusEucalyptus grandis28.543.890.84131forward
CNT30550185Citrullus lanatusIpomoea triloba27.6730.0295.28127forward
CNT3047959Citrullus lanatusPrunus dulcis23.7520.4194.5109reverse complement
CNT30221525Citrullus lanatusHordeum vulgare27.6715.193.7127forward
CNT30141896Citrullus lanatusLolium perenne26.5810.188.52122forward
CNT30628273Citrullus lanatusDaucus carota27.4520.6990.48126forward
CNT30688279Citrullus lanatusTriticum urartu27.671295.28127forward
CNT30484721Citrullus lanatusChara braunii27.239.9883.2125forward
CNT3036889Citrullus lanatusCucumis melo27.677.3691.34127forward
CNT30104673Citrullus lanatusOryza rufipogon27.2317.8393.6125forward

Expression of CNT3020733

Peptides detected in this lncRNA

>peptide 1 (42 aa)
ANDGFRATEWIKELKTFPIPTAAPAEAIVAAPAPIDFAPSNI*

Sequence

>CNT3020733
TGCCAATGATGGATTTCGCGCCACGGAATGGATCAAAGAACTGAAGACGTTTCCAATACCGACAGCAGCTCCCGCTGAAGCAATTGTAGCAGCTCCGGCA
CCCATTGATTTTGCACCTTCTAACATCTAGGGTAGGGTTGATAATATTCTCACGCTTTTGGATTCACGATTTTTCTTCTTCTTTTTTTAGCTCCTCGTTG
ACTTTTTGAATCTCTTCCAGCAGCCTTTTTCTCTCCCTCGTTCCTTTTCTCTTGGGCATCTCACTTGGAATGCTATGCATTCTTTTTTCAATTCAATAAT
TTAAGGTGTAAATGTATATATATTGAGGGAAGGCTCTTCCGCTATCAATTCAACCGAAAGAAAGACAAAAACCCAGTGCGTTTTGTATAGATCGAGACTT
GTTGCAGGATTTTTGACTCATTCCATACTGGGAAGAATTTCAGGAAATCGTTCGATAAA