Detailed information on CNT3020713


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08451|PIP1_SOLLC, E-value = 6e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042748Citrullus lanatusPrunus dulcis6.2324.9186.1172forward
CNT30552699Citrullus lanatusOryza glaberrima7.4421.8884.8886forward
CNT30120694Citrullus lanatusCitrus clementina6.9232.7983.7580forward

Expression of CNT3020713

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MNELVWLEQRRRWWLLVVLGVVLALRRRPNGLPLVELVGSQSDIFLLPLHDYFLF*

>peptide 2 (51 aa)
MDLDKISLGLERDGSDHNLVVKSCKSSADECSQAPGWVDAGAGDRNGGQVN*

>peptide 3 (32 aa)
MGCLSLNLLAPSRTSSSFPSMITSCFRTLFLLQ

>peptide 4 (29 aa)
MNVPTISAPSPSPLVYPLFTTLAPPPSLS*

>peptide 5 (77 aa)
TNPNKAGKGEWVSLFQISFFFFFLFGKLTIHSFTATHIITDNTALAYKLGPPSWNFNTQKTKIKGKNRKKGLKKLLD*

Sequence

>CNT3020713
GACAAATCCCAATAAAGCAGGTAAAGGAGAGTGGGTATCATTATTTCAAATTTCTTTTTTTTTTTTTTTTCTTTTTGGGAAATTGACCATACATAGCTTC
ACAGCCACACATATAATTACAGATAACACTGCACTCGCTTACAAATTGGGCCCCCCCAGTTGGAATTTCAATACACAGAAAACAAAAATAAAAGGAAAAA
ACAGAAAAAAGGGCCTCAAGAAACTGCTGGATTAAATGATACAGTTTGATTAAAAATTACAACACAAAAGGGAAAAACAGCCAATTTTGTCTTTTGGGTT
TGGGATCGGACGGCTGAAATTGAAGCATCATGGATTTAGATAAGATTTCACTTGGACTTGAAAGGGATGGCTCTGATCACAACTTGGTGGTAAAGAGCTG
CAAGAGCAGCGCCGATGAATGCTCCCAAGCTCCGGGCTGGGTTGATGCCGGTGCCGGTGATCGGAATGGTGGCCAAGTGAACTAAGAACACTGCAAACCC
AATTGGCAACGGTGCCAAAATCTACGGTGTAAACAAGGATGAATGTGCCGACGATCTCAGCGCCGAGCCCATCTCCTTTGGTGTATCCACTGTTCACAAC
GTTAGCTCCACCACCGAGCCTGTCGTAGGGCTTGGGTTGGAACCCCTTCACCACGCCGGCGCCGCAGATGGCACCAAGGCACTGCATCACTATGTAGAAA
ATCGCCCTGGTCAACGACAACTTTCTCGCCAAAAACAGCCCGAAAGTCACCGCCGGGTTAATGTGTCCACCGGAAATTCCAGCAGTACAGTAAACCAGAG
CGAAAATCATACCGCCGAAAGCCCAAGCAATCCCCTGAATCCCGACGGTCTTACAGGTGTTGCCGTTGGCTTCGTTGGACCGGACGACCCCCATGACGGT
CAAAACGGTGATGTAAAGGAAGAGGAAAGTGGCGAAAAACTCTGCGATTCCAGCTCTGTAAAAGGACCATGAATGAGCTCGTCTGGCTCGAACAGAGGCG
CCGGTGGTGGCTCCTTGTAGTCCTTGGCGTCGTCCTGGCTCTGCGCCGCCGTCCCAATGGGCTGCCTCTCGTTGAACTTGTTGGCTCCCAGTCGGACATC
TTCCTCCTTCCCCTCCATGATTACTTCTTGTTTTAGAACTCTGTTTCTTCTGCAAT