Detailed information on CNT30207123


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223386Helianthus annuusHordeum vulgare31.647.9396.381reverse complement
CNT30389925Helianthus annuusTriticum turgidum31.645.7695.0681reverse complement
CNT30592666Helianthus annuusMusa acuminata30.087.9196.177reverse complement
CNT30541981Helianthus annuusBrassica napus36.335.7910093forward
CNT30171414Helianthus annuusTrifolium pratense34.7725.5794.3889forward
CNT30452541Helianthus annuusSaccharum spontaneum20.313.1690.3852reverse complement
CNT30655399Helianthus annuusRosa chinensis36.3311.5810093forward
CNT30683092Helianthus annuusTriticum urartu31.643.6696.381reverse complement
CNT3025909Helianthus annuusPopulus trichocarpa22.276.5410057forward
CNT30104537Helianthus annuusOryza rufipogon31.6426.5696.381forward

Expression of CNT30207123

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLSMSHPYFPRVTGGPGGEYRDVIDIVTTRPFDFKCTLTLTIDFD

>peptide 2 (43 aa)
MRGSPPHHCMQGERACCFVYTWNVVYVTPLFSTCHRWARWGVS*

Sequence

>CNT30207123
ATGAGCCGTGTGATGGGAAACCTTCCCGCACGGTTCGGAGAGCACTGAATTAGAATGAGAGGTTCACCACCACATCATTGCATGCAAGGGGAGCGAGCTT
GTTGTTTTGTTTACACGTGGAATGTTGTCTATGTCACACCCCTATTTTCCACGTGTCACCGGTGGGCCCGGTGGGGAGTATCGTGACGTAATTGATATTG
TGACAACTCGACCTTTCGACTTTAAATGCACGTTGACTTTGACCATTGACTTTGAC