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Detailed information on CNT3020709


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DO53|PIP12_MUSAC, E-value = 1e-117

BLAST vs NONCODE:
NONATHT002568, E-value = 3e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3038976Citrullus lanatusCucumis melo52.4688.8789.46607forward
CNT3050352Citrullus lanatusCucumis sativus52.8183.2489.53611forward

Expression of CNT3020709

Peptides detected in this lncRNA

>peptide 1 (77 aa)
TNPNKAGKGEWVSLFQISFFFFFLFGKLTIHSFTATHIITDNTALAYKLGPPSWNFNTQKTKIKGKNRKKGLKKLLD*

>peptide 2 (29 aa)
MNVPTISAPSPSPLVYPLFTTLAPPPSLS*

>peptide 3 (32 aa)
MGCLSLNLLAPSRTSSSFPSMITSCFRTLFLLQ

>peptide 4 (51 aa)
MDLDKISLGLERDGSDHNLVVKSCKSSADECSQAPGWVDAGAGDRNGGQVN*

Sequence

>CNT3020709
GACAAATCCCAATAAAGCAGGTAAAGGAGAGTGGGTATCATTATTTCAAATTTCTTTTTTTTTTTTTTTTCTTTTTGGGAAATTGACCATACATAGCTTC
ACAGCCACACATATAATTACAGATAACACTGCACTCGCTTACAAATTGGGCCCCCCCAGTTGGAATTTCAATACACAGAAAACAAAAATAAAAGGAAAAA
ACAGAAAAAAGGGCCTCAAGAAACTGCTGGATTAAATGATACAGTTTGATTAAAAATTACAACACAAAAGGGAAAAACAGCCAATTTTGTCTTTTGGGTT
TGGGATCGGACGGCTGAAATTGAAGCATCATGGATTTAGATAAGATTTCACTTGGACTTGAAAGGGATGGCTCTGATCACAACTTGGTGGTAAAGAGCTG
CAAGAGCAGCGCCGATGAATGCTCCCAAGCTCCGGGCTGGGTTGATGCCGGTGCCGGTGATCGGAATGGTGGCCAAGTGAACTAAGAACACTGCAAACCC
AATTGGCAACGGTGCCAAAATCTACGGTGTAAACAAGGATGAATGTGCCGACGATCTCAGCGCCGAGCCCATCTCCTTTGGTGTATCCACTGTTCACAAC
GTTAGCTCCACCACCGAGCCTGTCGTAGGGCTTGGGTTGGAACCCCTTCACCACGCCGGCGCCGCAGATGGCACCAAGGCACTGCATCACTATGTAGAAA
ATCGCCCTGGTCAACGACAACTTTCTCGCCAAAAACAGCCCGAAAGTCACCGCCGGGTTAATGTGTCCACCGGAAATTCCAGCAGTACAGTAAACCAGAG
CGAAAATCATACCGCCGAAAGCCCAAGCAATCCCCTGAATCCCGACGGTCTTACAGGTGTTGCCGTTGGCTTCGTTGGACCGGACGACCCCCATGACGGT
CAAAACGGTGATGTAAAGGAAGAGGAAAGTGGCGAAAAACTCTGCGATTCCAGCTCTGTAAAAGGACCATGAAGTGAGCTCGTCTGGCTCGAACAGAGGC
GCCGGTGGTGGCTCCTTGTAGTCCTTGGCGTCGTCCTGGCTCTGCGCCGCCGTCCCAATGGGCTGCCTCTCGTTGAACTTGTTGGCTCCCAGTCGGACAT
CTTCCTCCTTCCCCTCCATGATTACTTCTTGTTTTAGAACTCTGTTTCTTCTGCAAT