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Detailed information on CNT30206613


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550295Helianthus annuusIpomoea triloba56.0483.1896.41974forward
CNT30730396Helianthus annuusCorchorus capsularis74.1780.8294.651289forward
CNT3072442Helianthus annuusQuercus suber72.8472.9392.51266forward
CNT30506509Helianthus annuusNicotiana attenuata69.5182.5796.191208forward
CNT3047192Helianthus annuusPrunus dulcis66.0533.8294.341148forward
CNT30585954Helianthus annuusMusa acuminata66.473.7993.241154forward
CNT30234560Helianthus annuusBrassica oleracea65.8259.9994.321144reverse complement
CNT30312195Helianthus annuusCamelina sativa66.2846.1994.791152reverse complement
CNT30265942Helianthus annuusBrassica rapa69.3965.994.441206forward
CNT30356368Helianthus annuusLactuca sativa64.0486.0197.661113forward
CNT3027145Helianthus annuusPopulus trichocarpa68.372.5696.711187reverse complement
CNT3035823Helianthus annuusCucumis melo73.5947.1194.921279forward
CNT30334961Helianthus annuusCynara cardunculus60.9949.9195.091060forward

Expression of CNT30206613

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MNRKPGYGAKLRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 2 (53 aa)
MPVEMPLCRSWLAARAVTACFGTCVLLAPACGHPIRPVLKHGPRSLTCVRVNG*

>peptide 3 (33 aa)
MCASQRVSKPARRKEADWRDPPRGVHRRPTLIF*

>peptide 4 (39 aa)
MKFNGIQRDHVFIHRVRSLEDLLGTWTGADWYGGQSPGC*

>peptide 5 (45 aa)
LKLPSCMRAPPEAHTIIRGRNSLVAYSIKRVIFSPTTDPILPPIN*

Sequence

>CNT30206613
CTCAAACTTCCTTCTTGCATGCGTGCCCCTCCGGAAGCACACACTATAATAAGAGGTAGAAATTCTTTAGTAGCGTATTCAATTAAACGGGTAATTTTCT
CCCCGACGACGGATCCCATACTACCCCCCATAAACTGAAAATCCATAACCGCAATTGCTACGTTAATACCGTCTAGTTGCCCTATGCCTGTTTGAACAGC
CTCGGTTAATCCTGTCTTTCTTTGATAAGAATCGATACGATTTTTATAAGGCTCCTCCTCCGAATGAAATTCAATGGGATCCAGAGAGACCATGTCTTCA
TCCATAGGGTACGCTCTCTAGAAGATTTGCTCGGGACGTGGACCGGTGCGGATTGGTACGGCGGCCAAAGCCCAGGCTGTTGATATGCCTGTGGAGATGC
CGTTGTGCCGATCGTGGTTGGCAGCGCGCGCCGTCACGGCGTGCTTCGGCACCTGCGTGCTCCTGGCACCGGCCTGCGGGCACCCCATTCGGCCCGTCTT
GAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGCAAGGCGCAAGGAAGCTGATTGGCGGGATCCCCCTCGTGGGGTGC
ACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGA
GGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTT
CCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGGTGCGTGTTCTATCGGGTAAAGCGAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTAT
TCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTTTGTTGAGCCGCGCCACGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCG
ATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCAAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCAT
GGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTACACCCGGCCGT
CGAGGCAAGTGCCAGGCCCCGATGAGTAGGAGGGCGCGGCGGTCGCTGCAAAACCTTGGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCGGATCTTGGT
GGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGAGACGG
GGGAAGCCCGTCAGATAGCGTGTTTCACGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGTGGCGGCTGACGGCAACGTTAGGGATT
CCGGAGACGTCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACAGCCTGCCCACCCTGGAAACGACTCAGTCGGAGGTAGGGTCCAGCGGCTGG
AAGAGCACCGCACGTCTTTCTTAGGGAAACCTACTACGAGATTCTGATAAATAGCATTGATAGTTTGAGATTCCAGGAGCTACTGTATTTGCTGGATGAG
TTCAGCAAGGTAGCGTCGTAGTTTAGTAGCTGCTGAAC