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Detailed information on CNT30206557


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Helianthus annuusSetaria viridis37.9259.7195.72818forward
CNT30519050Helianthus annuusJuglans regia38.0272.8997.44820forward
CNT30501384Helianthus annuusCoffea canephora22.0244.6497.26475forward
CNT30619379Helianthus annuusSesamum indicum36.21100.1397.31781forward
CNT30200729Helianthus annuusPisum sativum37.9233.6397.43818forward
CNT3048154Helianthus annuusPrunus dulcis38.1178.3696.47822forward
CNT30224448Helianthus annuusHordeum vulgare32.7389.2594.33706forward
CNT30544510Helianthus annuusBrassica napus38.0251.2596.95820forward
CNT30239033Helianthus annuusBrassica oleracea38.0260.3896.83820forward
CNT30444212Helianthus annuusAegilops tauschii37.9262.8795.72818forward
CNT30261854Helianthus annuusBrassica rapa37.2375.3396.89803forward
CNT3010382Helianthus annuusZea mays38.1188.0192.34822reverse complement
CNT30365254Helianthus annuusSorghum bicolor37.8390.1794.24816forward
CNT30413997Helianthus annuusPapaver somniferum26.6168.7497.39574forward
CNT3036408Helianthus annuusCucumis melo37.8377.298.04816forward

Expression of CNT30206557

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPIQNGFPFRLGSHSKRSANAKRGQNKDP*

>peptide 2 (29 aa)
MTTGRINQVAFLFDDAHPEWLPIPAGQSF*

>peptide 3 (30 aa)
MMRRRHKGRAIRRVIMNHRSNGQSPRRPFI*

>peptide 4 (32 aa)
MTSKHLSKPSKRVKHLCQNSPQQPMLSTSLGR*

>peptide 5 (32 aa)
MHPFQKSGFVARISSRITTVIRVARYHQTNYN*

>peptide 6 (33 aa)
MQELPRSMIDIGRVPTPQQASNARIGIFPPAEA*

>peptide 7 (36 aa)
MPRGTAGNQMHKAIPKTHRAMRKLTAIKATNCSLIP*

>peptide 8 (36 aa)
MFPKTTRQVAPTVCQEARQATKCTKRFPKHTGRCES*

>peptide 9 (42 aa)
MGHNINACINDAVQRDSFMVHLMPSRRHKTKATLIDRDNSVT*

>peptide 10 (49 aa)
SIPITMKFQRFPGPVGQGYILVEYISVARVRPRTSKGITDLLLPQTSVA*

>peptide 11 (51 aa)
MASHSGWAVILREARTLNEGRTRIPKDPCPHKVPYPRYQAMLNGPQHQCMH*

>peptide 12 (71 aa)
MHLYGGCFRKPPGKWHQPYAKRHGRQPNAQSDSQNTPGDAKADSYKGHKLFTYSMTPTQFLIAMIIAIQKS*

>peptide 13 (83 aa)
MIDIGRVPNPQQASNTPIGRFHPLELAIAGWLCCQNVTLKQASLCHHRSRLQLTWLLASSRDFTHRHACVNMPMGPCRNYLGR*

Sequence

>CNT30206557
ATCTATCCCCATCACGATGAAATTTCAAAGATTTCCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA
ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGGCCATGGAGGGATACCTCCACAT
AGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG
AAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT
GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAG
GGCAGAAATTTGAATGATGCGTCGCCGGCACAAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATCGCAGCAACGGGCAAAGCCCGCGTCGACCTTTT
ATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAGATACCATCAAACAAACT
ATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA
GGATCAACCAGGTAGCATTCCTCTTTGACGATGCCCATCCAGAATGGCTTCCCATTCCGGCTGGGCAGTCATTCTAAGAGAAGCGCGAACGCTAAACGAG
GGCAGAACAAGGATCCCTAAGGACCCATGCCCACATAAGGTTCCGTATCCGAGGTACCAAGCAATGCTCAATGGGCCACAACATCAATGCATGCATTAAC
GATGCGGTGCAAAGAGACAGCTTCATGGTTCATCTTATGCCATCAAGACGACACAAGACGAAAGCAACTTTGATCGATCGGGACAATTCCGTGACGTAGG
TAGGCAACACAGGAAACCCACAATCTGCTTAGGCTATACAAGCCTAGGCAAAAACTGAAGAGGTAAGTCGGGTGGCAGTTGTTGCGCAAGCAAAGAGCCA
ACCACCCGTAACAAACCAAACACCACTCATGCACCTTTACGGTGGATGTTTCCGAAAACCACCCGGCAAGTGGCACCAACCGTATGCCAAGAGGCACGGC
AGGCAACCAAATGCACAAAGCGATTCCCAAAACACACCGGGCGATGCGAAAGCTGACAGCTATAAAGGCCACAAATTGTTCACTTATTCCATGACTCCTA
CTCAGTTTTTGATAGCCATGATAATTGCGATCCAAAAGTCATAATCAGGTCGGCATAGAGGATTGGGGTTCAATGACATATTATACACACTGACGAAGCT
AAACCGTCTGGTGAATGACATTGGGTTCCAGCTCTCAGCTTCCCACATAAATTTATTGGATCCCAAGCATCATGACATCTAAACATTTATCAAAGCCAAG
CAAACGAGTGAAGCATCTGTGCCAAAATAGCCCTCAGCAACCCATGTTGAGCACTTCGTTGGGTCGATGATAGATATTGGGCGTGTCCCAAATCCACAGC
AAGCAAGCAACACCCCTATAGGCAGATTCCACCCGCTTGAACTAGCAATTGCGGGCTGGCTGTGCTGCCAGAATGTTACCTTAAAGCAAGCATCCTTGTG
CCATCATCGATCCAGACTACAGCTAACATGGTTGTTGGCAAGCTCCAGGGACTTTACCCATAGGCACGCTTGCGTGAATATGCCTATGGGGCCATGCAGG
AATTACCTAGGTCGATGATAGATATTGGGCGTGTCCCAACTCCACAACAAGCAAGCAACGCCCGTATAGGCATATTTCCACCCGCTGAAGCTTGAACTAG
CAATGCGGTCTGGTGCCAAAACGTTACCAGCAATCATCCTTGTGCCATCATCTCATCCGTAGAATAATACCCAACATGGCTGGCAAGCTGAACAGACGTT
AACCATAGACACGCTTGCCTGAATGTCTATGTTGTCGTGCCAAACTACCGAAGTGGG