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Detailed information on CNT3020650


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4VZH4|YCF3_CUCSA, E-value = 5e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Citrullus lanatusOryza sativa25.347.9388.66441forward
CNT30529029Citrullus lanatusEucalyptus grandis40.834.6786.48710forward
CNT30618958Citrullus lanatusSesamum indicum48.8515.2587.18850forward
CNT30730408Citrullus lanatusCorchorus capsularis25.8695.1494450forward
CNT30632297Citrullus lanatusVigna unguiculata44.643.8984.92776forward
CNT30201085Citrullus lanatusPisum sativum27.2423.4791.56474forward
CNT3047566Citrullus lanatusPrunus dulcis70.863.8787.821232forward
CNT3094383Citrullus lanatusSolanum tuberosum6.6153.4989.57115reverse complement
CNT30194121Citrullus lanatusSecale cereale25.3449.2791.38441forward
CNT30588877Citrullus lanatusMusa acuminata12.1877.6688.68212reverse complement
CNT30510815Citrullus lanatusSolanum lycopersicum13.7950.3189.58240forward
CNT30556045Citrullus lanatusOryza glaberrima25.3413.5188.66441forward
CNT30171250Citrullus lanatusTrifolium pratense5.827.6793.07101forward
CNT30245953Citrullus lanatusAvena sativa4.3128.285.3375reverse complement
CNT30598583Citrullus lanatusFraxinus excelsior15.6327.3188.6272forward
CNT30445979Citrullus lanatusSaccharum spontaneum20.9292.6291.48364forward
CNT3017916Citrullus lanatusZea mays25.2321.2990.89439forward
CNT30606803Citrullus lanatusGossypium raimondii13.6884.185.71238forward
CNT30232528Citrullus lanatusAnanas comosus25.5222.4492.57444forward
CNT30217417Citrullus lanatusKalanchoe fedtschenkoi21.6180.3491.49376forward
CNT30655373Citrullus lanatusRosa chinensis57.723.9886.751004forward
CNT30627898Citrullus lanatusDaucus carota48.9727.6889.55852forward
CNT30351181Citrullus lanatusEragrostis tef6.923.7685.83120forward
CNT30595954Citrullus lanatusOryza meridionalis24.3132.2288.89423forward
CNT30360010Citrullus lanatusLactuca sativa13.2821.5192.64231forward
CNT30430934Citrullus lanatusPapaver somniferum49.8313.2787.54867forward
CNT3022800Citrullus lanatusPopulus trichocarpa19.5410092.65340forward
CNT30332506Citrullus lanatusDioscorea rotundata25.3448.4186.62441forward
CNT30149145Citrullus lanatusBrachypodium distachyon25.3424.5591.16441forward
CNT30103542Citrullus lanatusOryza rufipogon20.5250.3591.6357forward
CNT30116375Citrullus lanatusOryza nivara11.5555.5281.09201reverse complement
CNT30604206Citrullus lanatusOryza punctata11.3849.7590.4198forward
CNT30114189Citrullus lanatusFicus carica48.7921.5588.57849forward

Expression of CNT3020650

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKRTILISAKLKKKRILFILQIGVILEVF*

>peptide 2 (30 aa)
MVLQVSKIQTRWMFVVPTIFLSSDPDKEKG*

>peptide 3 (58 aa)
MVLLDKKKRVTLTISLSSTPLNFQELVTSTVFDGSTGIQNTNEMDVCCPNHFSKFRSR*

>peptide 4 (61 aa)
MKIKKKKKINRVFLFETPCDLQPILGFNIITGSKCYGLFPILSGLIEPSLRNFRISLSNGL*

Sequence

>CNT3020650
TAATGAAAATAAAGAAAAAAAAAAAAATAAACAGAGTTTTCTTATTTGAAACGCCTTGTGATCTTCAACCAATTTTGGGCTTCAATATAATTACCGGGAG
TAAGTGCTATGGCTTGTTTCCAATACTCAGCGGCTTGATTGAACCAAGCCTCCGCAATTTCAGAATCTCCCTGTCGAATGGCCTATAGTCGCACGTAATG
ACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGGTTTCGTTCTAGTGCCCGAAAATAATATTCCAAAGCTTTCGTATGTTCTCCGTTCCTT
GTGTGGATAAGACCTATGTTATAGAGTATATAACTTCGATCATAGGGATCGATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCATAAT
TTCCTTCGGATTGAGCCGACATCCGTTACGGTCGTTCGTTATTCCATTCAAAGAATCTCCGTTCCAGAACCGTACGTGAGATTTTCATCTCATACGGCTC
CCCCTTTATGTGATGCGCATAATGAGATGAGAATAATACATGCAATCAAAAAAGATTGAAATACTCTCATTATGAACTCATGGGACTAGCGTTTTTACAA
AAAATCTCTAGCCAACCTTCCTGTAAAAGATCTTTTCTTAACATCAAGCATGGTGTTACTAGATAAAAAAAAAAGGGTAACTCTAACAATTTCTTTGTCC
TCAACGCCTCTAAATTTCCAGGAATTAGTCACTTCAACAGTCTTCGATGGTTCTACAGGTATCCAAAATACAAACGAGATGGATGTTTGTTGTCCCAACC
ATTTTTCTAAGTTCCGATCCCGATAAGGAAAAGGGATAATTTATAACAAAGTTTTCGTGTTGTTGATTCCTAGGTGTAGTGCTTCTTCCCCTCTGCTACC
TATTTTTACTAGTGAATATTTTTACTAGTGGAGTAGGGTTGACTTAATCCATAGGTTACACCTTTCGCTTAATACTAGAATCGACAATTAAAGCATCTGA
GGTTACATTAATCGGGGATACACGACAGAAGGAATTTTTTTATTTTCAAATTGCACCTCCAAGAAGCGTAGATTTATTTCAATTATTGTTTTCTTTCTAT
CCCGAATACTGTGTCTTTCTACTAAGACGGAGAGCGGTAAAGAAAATTGAAAAAAAAAAAATCAAATCGCACCATCTCTGTAATAGGTGAATGCCTCTTT
TTCCCCGGAAGTTGTCGGAATTATTCGTAATAAGATATTGGCTACAATTGAAAAGGTCTTATCGATAAAATTTCCATTTATCCCACCAGATCTAGGCATC
GGTACCAACCCCATTCTATAATTTCTTTTAATTACCTCTCGTGAGAAAATGATCCCACAAACAAAGGAATTGCATAGTACGAAATAACATAAAAACGGAT
TCATTAAAAAATCCCACTCGATATTCAAATTGTTTCTTTTTTATTTCACAGGAATCAATAAAACAGAAGAAATATTTCAATCCGGTTAAATTTCATCCAA
ATGTAGTAGGATCAGAATGAAGAGAACTATTCTGATTTCAGCGAAGTTGAAGAAAAAAAGAATTTTATTTATCTTACAGATTGGGGTAATTCTAGAAGTT
TTTTGATTGAATTATGATACAAAGAGCAAAAAGAATCGAATAATTATTCTATGATTCATAAATTTTGACTAGATCTATGTATGGGATAAACAGTTGTTGG
TGAAAAATCGAAAATTGTAAAAGTCGAATTTTTATAAAAA