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Detailed information on CNT30206348


BLAST search results

BLAST vs Swiss-Prot:
sp|O04857|PP12_TOBAC, E-value = 2e-143

BLAST vs NONCODE:
NONPOPT001921, E-value = 8e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3094286Helianthus annuusSolanum tuberosum44.8572.5184.18335forward
CNT30553142Helianthus annuusOryza glaberrima11.1128.7286.7583forward
CNT30338251Helianthus annuusEragrostis tef33.4747.1782.8250forward
CNT30595937Helianthus annuusOryza meridionalis37.0866.1184.12277forward
CNT30100650Helianthus annuusOryza rufipogon37.0838.8584.12277forward

Expression of CNT30206348

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHSILSSIRAATGRQLKQSVKTFQSRTLKRRLHSS*

Sequence

>CNT30206348
GACTAGGATCCGACCAAAGCAAATCACAAAGCAAACCCGAATCCGGAACATCAGTCGGGCGCGACAAGTTCCGTATCTGATCTAAGTTAGTTAGATCAGG
AGAAAGACCACCATGCATGCATAGTATCTTGTCATCGATAAGAGCAGCCACAGGAAGACAGTTGAAACAGTCAGTAAAAACTTTCCAAAGTCGAACATTG
AAACGGCGTTTGCATTCATCATAAAATCCGTATATCCTGTTGATGGAAGCACATTCATGGTTTCCTCTTAGAAGGAAGAAATTTTCGGGGTATTTGATTT
TGTAGGCAAGTAAAAGGCATATGGTTTCCAGACTTTGCTTGCCACGGTCCACGTAATCACCTAGGAATAAATAGTTTGATTCGGGAGGAAATCCGCCGTA
TTCGAATAACCTTAAGAGGTCCCCGTATTGTCCGTGAATGTCACCTATCTTAATCGGAGCTTCGAGCTCTAACAAATTAGGCTGTTGAAGAAAAATCTCA
CGAGAAGTGGTACAAAGCAAGCGGATCTCCGCCTCGGAGAGCTGAACCTGGCGTGTGGTCCTGGCTTGCCTGAACTCCAACAAGCGGTTGATAATATCAT
CGAGTAAGTTAGGGTTCATCGTCTGTCCATTTTGAGCCATTGATCTCTTCCAGAAACCCTAGATCTCGATGATGAATGTGGCGGAAAGCCCTAATTGAGA
ATGGCTTTTTGTGTTTGGTTTGGTGGAATAAACAATGGAAAAGTTGT