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Detailed information on CNT3020608


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 3e-92

BLAST vs NONCODE:
NONTPRT002505, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Citrullus lanatusEucalyptus grandis48.7560.5680.93215forward
CNT30700549Citrullus lanatusQuercus lobata87.397.4782.34385forward
CNT30499549Citrullus lanatusCoffea canephora93.8884.4981.64414forward
CNT30486152Citrullus lanatusOlea europaea81.4139.6782.73359forward
CNT30503775Citrullus lanatusNicotiana attenuata69.1668.8581.31305forward
CNT30177095Citrullus lanatusSecale cereale37.4111.981.82165forward
CNT30131528Citrullus lanatusLolium perenne35.1533.6280.65155forward
CNT30718631Citrullus lanatusMalus domestica golden88.4467.9481.79390forward
CNT30341852Citrullus lanatusEragrostis tef37.4111.9481.21165forward
CNT30359656Citrullus lanatusLactuca sativa93.224.3282.48411forward
CNT30570592Citrullus lanatusVitis vinifera49.4367.4983.49218forward
CNT30645151Citrullus lanatusCannabis sativa64.429.884.15284forward
CNT3055709Citrullus lanatusAmborella trichopoda41.2727.8384.07182forward
CNT30332943Citrullus lanatusCynara cardunculus92.2978.1282.06407forward
CNT3050773Citrullus lanatusCucumis sativus99.3277.9494.06438forward

Expression of CNT3020608

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MMNQIILPSSEEIINDDHAIASLNQTVHEMASDESGATSNDNPQVPLLQSRRD

>peptide 2 (39 aa)
TDRIDVAPVGFSLRVLERITVDFAGASEQKASADSLRKP*

Sequence

>CNT3020608
ACCGATAGGATTGACGTTGCCCCAGTAGGTTTCAGCCTGCGGGTGTTGGAGCGGATCACCGTAGACTTCGCTGGTGCTAGTGAGCAAAAAGCGAGCGCCG
ACTCTCTTCGCAAGCCCTAGCATGTTCAGTGTGCCGACAACATTTGATATGATTGTCTTGACGGGATTGAATTTATAATGAACAGGAGAAGCAGGGCAAG
CCAAGTGGTAGATCTGATCAACTTCCAATAGAAGCGGCTCAACGACGTCGTGTCGTATCAGTTCAAATCTCGGGTTTCCGAAATGATGAACCAGATTATC
CTTCCGTCCAGTGAAGAAATTATCAACGACGATCACGCTATCGCCTCTCTCAATCAAACGGTCCACGAGATGGCTTCCGACGAATCCGGCGCCACCAGTA
ACGACAATCCTCAGGTTCCTCTTCTTCAATCCCGGCGGGAC