« Back to Citrullus lanatus search


Detailed information on CNT3020603


BLAST search results

BLAST vs Swiss-Prot:
sp|P93253|SAHH_MESCR, E-value = 2e-153

BLAST vs NONCODE:
NONBRAT004190, E-value = 1e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Citrullus lanatusSetaria viridis22.9371.8682.82355forward
CNT30517189Citrullus lanatusJuglans regia16.1564.2784.8250forward
CNT30702258Citrullus lanatusQuercus lobata16.3453.8386.96253forward
CNT30375086Citrullus lanatusArabidopsis thaliana23.7151.1985.56367forward
CNT30619260Citrullus lanatusSesamum indicum40.1858.481.99622forward
CNT3072357Citrullus lanatusQuercus suber26.6140.1289.08412forward
CNT30380227Citrullus lanatusManihot esculenta10.1437.6592.99157forward
CNT30402445Citrullus lanatusBeta vulgaris18.7365.3284.83290forward
CNT30200315Citrullus lanatusPisum sativum22.868.4186.69353forward
CNT30709695Citrullus lanatusGlycine max12.4757.7893.26193forward
CNT30543653Citrullus lanatusBrassica napus21.9649.2880.88340forward
CNT3076654Citrullus lanatusBrassica juncea21.0669.8184.97326forward
CNT30259654Citrullus lanatusBrassica rapa16.1510085.6250forward
CNT30612558Citrullus lanatusArabis alpina13.756.2388.21212forward
CNT30607325Citrullus lanatusGossypium raimondii38.7646.5187600forward
CNT30231757Citrullus lanatusAnanas comosus6.7239.5486.54104forward
CNT30651401Citrullus lanatusRosa chinensis9.2453.3686.71143forward
CNT30365203Citrullus lanatusSorghum bicolor10.474.8882.61161forward
CNT30355186Citrullus lanatusLactuca sativa17.8337.584.06276forward
CNT30573685Citrullus lanatusVitis vinifera8.2732.8285.16128forward
CNT3021984Citrullus lanatusPopulus trichocarpa24.4217.6785.19378forward
CNT30329805Citrullus lanatusDioscorea rotundata8.8523.3491.24137forward
CNT30103876Citrullus lanatusOryza rufipogon22.5577.0481.66349forward
CNT30117878Citrullus lanatusOryza nivara22.5577.5682.52349forward
CNT30723196Citrullus lanatusLupinus angustifolius24.4847.5586.28379forward

Expression of CNT3020603

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SVKIKHCTNKEKVQNIHKFRDSYISKRKKY*

>peptide 2 (31 aa)
MGLSSTYRPFSPSNHQPQNTSKSKTKPLKFS*

>peptide 3 (35 aa)
MSNWLPDLTGFEQENQHRNQIYSNREMKNRNETQI*

>peptide 4 (38 aa)
MKAAICFAFFFFFLPLSFSPIKTMTQIQQKNKTTNKNQ*

Sequence

>CNT3020603
AATCGGTGAAGATAAAGCACTGTACAAATAAAGAGAAAGTACAAAATATCCATAAATTTCGGGACAGCTACATTTCAAAAAGAAAAAAATATTAATAATA
ATAATGAAGGCAGCAATTTGTTTTGCTTTTTTTTTTTTTTTTCTCCCTCTTTCTTTCTCACCGATAAAAACGATGACACAGATTCAGCAAAAAAATAAAA
CAACAAACAAAAACCAGTAATGTTTTTCACACACAGCCAAATCTAACCTTCCTTATTCATCCCATACAATGGGTCTTTCTTCAACATACAGACCCTTTTC
CCCTTCAAACCACCAACCCCAAAACACTTCAAAAAGTAAAACAAAACCCTTAAAATTTTCCTAACCATAAATCACTAAGTTGTGAAAATCAAGCCTCCAC
ACTTCCCCCTCAGTACCTGTAGTGAGCAGGCTTGTATGGACCCTCAACTGGCACATTGATGTAGTCAGCTTGGTCCTTGCTCAGCTTCGTCAGCTTAGCC
CCAAGTTTGCCAAGGTGCTTTGGCAACACGTAGACCTTCTTCTCATACTTCCCGGATGCCTTCTCGTTCCATAGCTCGAGCTGTGCAATCACTTGGTTTG
TGAATGAGCAGGACATCACAAAGCTAGGGTGTCCAGTGGCACAACCTAAGTTCATGAGTCGCCCCTCTGCCAACACGATGATGCCAGTGTTGGTTTCAGG
GAAGACCCACCTGTCTGTTTGAGGCTTGATGGTGATACGCTTCACACCGGGGTAATTCTCAAGACCAAGCATGTCAATCTCATTGTCAAAGTGACCAATG
TTGCAAACAATGGCATTGTTCTTCATCTTCCTCATGTGATCAACCATGATGATATCCTTGTTACCGGTGGTGGTGACGAAGATATCAGCCTCCGAGACGA
CATCTTCAAGGGTGAGGACTTGAAGGGCACAAATTGGATCGATCTCAGTCACGATCACACGAGCTCCAGCTTGCTTGAGGGCAGCAGCACAACCCTTTCC
AACATCTCCATAACCGCACACAACCGCGACCTTACCGGCAATCATGACATCAGTAGCTCTCATCAAACCATCAGGGAGAGAGTGACGGCATCCATACAAG
TTGTCAAACTGTAAGCAATCAGAAATGAATCAACAAGAACCAGATTAGTGAAGAGTTCAAAATTGACCACAAAACATAGCAATGGCACGATTAGCAGATT
AAATATCTTTGATTATCAGTGAACAGGGAATAAAAAGGGTAACTGAAACTGAAAGTGGACAGAAAGAACATTAGAACAATGGTCAACAATAATGAAGTCC
ATTAACAGCTTGGTTCAAACTCATGCAAGATTCAGAAGCTAATCCAAACAATTACGCTCACAGAGTTACAGTTCAAACACTACACTATACAAAGCATGGA
TGAGCAATTGGTTACCAGATCTGACGGGATTTGAACAGGAAAATCAACACAGAAACCAGATCTACAGCAACAGAGAAATGAAGAACAGAAATGAAACTCA
GATCTAAAACAAAAGCAGCAGAAGAAATACCTTGCTCTTAGTGACAGA