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Detailed information on CNT3020599


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670523Citrullus lanatusSetaria viridis16.5153.2287.37190forward
CNT30529934Citrullus lanatusEucalyptus grandis12.3434.0583.8142forward
CNT30505192Citrullus lanatusNicotiana attenuata17.0334.6984.69196forward
CNT30259492Citrullus lanatusBrassica rapa17.958.6987.86206forward
CNT30601056Citrullus lanatusFraxinus excelsior15.232.3582.29175forward
CNT30680065Citrullus lanatusTriticum urartu6.620.0586.8476forward
CNT30720770Citrullus lanatusTriticum spelta15.4629.6784.27178forward
CNT30705212Citrullus lanatusPrunus avium17.955.9889.32206forward
CNT30151326Citrullus lanatusBrachypodium distachyon11.7333.2582.96135forward
CNT30723271Citrullus lanatusLupinus angustifolius17.6477.1986.21203forward

Expression of CNT3020599

Peptides detected in this lncRNA

>peptide 1 (46 aa)
FGTATFQKEKNINNNNEGSNLFCFFFFFSPSFFLTDKNDDTDSAKK*

>peptide 2 (35 aa)
MSNWLPDLTGFEQENQHRNQIYSNREMKNRNETQI*

>peptide 3 (53 aa)
SGQLHFKKKKILIIIMKAAICFAFFFFFLPLSFSPIKTMTQIQQKNKTTNKNQ*

>peptide 4 (31 aa)
MGLSSTYRPFSPSNHQPQNTSKSKTKPLKFS*

Sequence

>CNT3020599
TTCGGGACAGCTACATTTCAAAAAGAAAAAAATATTAATAATAATAATGAAGGCAGCAATTTGTTTTGCTTTTTTTTTTTTTTTTCTCCCTCTTTCTTTC
TCACCGATAAAAACGATGACACAGATTCAGCAAAAAAATAAAACAACAAACAAAAACCAGTAATGTTTTTCACACACAGCCAAATCTAACCTTCCTTATT
CATCCCATACAATGGGTCTTTCTTCAACATACAGACCCTTTTCCCCTTCAAACCACCAACCCCAAAACACTTCAAAAAGTAAAACAAAACCCTTAAAATT
TTCCTAACCATAAATCACTAAGTTGTGAAAATCAAGCCTCCACACTTCCCCCTCAGTACCTGTAGTGAGCAGGCTTGTATGGACCCTCAACTGGCACATT
GATGTAGTCAGCTTGGTCCTTGCTCAGCTTCGTCAGCTTAGCCCCAAGTTTGCCAAGGTGAAGGGCGGCTACCTTCTCGTCAAGGTGCTTTGGCAACACG
TAGACCTTCTTCTCATACTTCCCGGATGCCTTCCATAAGAGCCTGAAGGGCACAAATTGGATCGATCTCAGTCACGATCACACGAGCTCCAGCTTGCTTG
AGGGCAGCAGCACAACCCTTTCCAACATCTCCATAACCGCACACAACCGCGACCTTACCGGCAATCATGACATCAGTAGCTCTCATCAAACCATCAGGGA
GAGAGTGACGGCATCCATACAAGTTGTCAAACTGTAAGCAATCAGAAATGAATCAACAAGAACCAGATTAGTGAAGAGTTCAAAATTGACCACAAAACAT
AGCAATGGCACGATTAGCAGATTAAATATCTTTGATTATCAGTGAACAGGGAATAAAAAGGGTAACTGAAACTGAAAGTGGACAGAAAGAACATTAGAAC
AATGGTCAACAATAATGAAGTCCATTAACAGCTTGGTTCAAACTCATGCAAGATTCAGAAGCTAATCCAAACAATTACGCTCACAGAGTTACAGTTCAAA
CACTACACTATACAAAGCATGGATGAGCAATTGGTTACCAGATCTGACGGGATTTGAACAGGAAAATCAACACAGAAACCAGATCTACAGCAACAGAGAA
ATGAAGAACAGAAATGAAACTCAGATCTAAAACAAAAGCAGCAGAAGAAAT