« Back to Helianthus annuus search


Detailed information on CNT30205642


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT001646, E-value = 6e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549212Helianthus annuusIpomoea triloba87.5430.0397.9906forward
CNT30270599Helianthus annuusChenopodium quinoa91.5958.2395.57948forward
CNT30294119Helianthus annuusTriticum aestivum26.47100.3795.99274reverse complement
CNT30552690Helianthus annuusOryza glaberrima91.1161.5992.9943forward
CNT30442196Helianthus annuusAegilops tauschii79.6197.1793.81824reverse complement
CNT303548Helianthus annuusZea mays91.1166.2293.64943reverse complement
CNT30354697Helianthus annuusLactuca sativa33.6249.29100348forward
CNT30410483Helianthus annuusPapaver somniferum93.0447.0798.13963forward
CNT30150154Helianthus annuusBrachypodium distachyon78.4570.9892.86812forward
CNT30104374Helianthus annuusOryza rufipogon90.5370.5692.85937reverse complement
CNT30576813Helianthus annuusOryza barthii19.0326.7396.45197forward

Expression of CNT30205642

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRMHLWCTSYRAHGKRWVAKCGADNC*

>peptide 2 (38 aa)
MSRLYPLSKYIGLPAPRQKDPMKLHCSLGLALGLSCAS*

>peptide 3 (29 aa)
LKIKVYRTHMKFYHEQIVSIEQVYRTTCT*

Sequence

>CNT30205642
GTTGAAGATAAAAGTATATCGAACCCATATGAAGTTTTACCATGAGCAGATTGTATCCATTGAGCAAGTATATCGGACTACCTGCACCTAGACAGAAAGA
CCCTATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCATCTTAGGTGGAAGGCGAAGAAGGCCTCCTTCCGGGGGGTCCGAGCCAT
CAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGAACGTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGC
CTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACC
CGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGAT
CTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCC
ATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGA
GAGGACCGGGAAGGATGCACCTCTGGTGTACCAGTTATCGTGCCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAG
TAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCAACTTCCCCAGAGCCTCCGGTAGCACAGCCGAGACAGCGACGGGTTCTCTGCCCCTGCGGGGA
TGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGACGAGCCGTTTATCATTACGATAGGTGTCAAGTGGAAGTGCAGTGATGTACGCAG
CTGAGGCATCCTAACAGACCGGTAGACTTGAACCT