« Back to Helianthus annuus search


Detailed information on CNT30204946


BLAST search results

BLAST vs Swiss-Prot:
sp|P28551|TBB3_SOYBN, E-value = 2e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378644Helianthus annuusArabidopsis thaliana32.2742.7690.91121forward
CNT30727960Helianthus annuusCorchorus capsularis22.1316.5787.9583forward
CNT3078381Helianthus annuusBrassica juncea31.7344.5789.92119forward
CNT30614348Helianthus annuusArabis alpina34.412.2387.6129forward
CNT30684516Helianthus annuusTriticum urartu19.7328.1489.1974forward
CNT30621035Helianthus annuusCajanus cajan21.611.8485.1981forward
CNT3034106Helianthus annuusTheobroma cacao10.9320.192.6841forward

Expression of CNT30204946

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MDRQCGVVRLQIHQHGAWNKPSAAGLVVVDVDPLQLKFRVTGVLSGDIDAVFRTHNLPKLCSNLVSALASLNVKNLS

>peptide 2 (47 aa)
YKHRTYIIDQNGCKNLQLGVVSLRVLKQISYKASLSRTIHSSAFSTS*

Sequence

>CNT30204946
TATAAACATAGAACATACATAATAGATCAGAATGGTTGTAAGAACTTACAGCTAGGGGTTGTGAGCTTGAGAGTCCTAAAGCAAATATCGTACAAAGCCT
CGTTATCAAGAACCATACATTCATCAGCATTCTCAACAAGCTGATGGACCGACAATGTGGCGTTGTAAGGCTCCAGATCCATCAGCACGGCGCGTGGAAC
AAACCTTCCGCCGCTGGCCTCGTTGTAGTAGACGTTGATCCTCTCCAGCTGAAGTTCAGAGTCACCGGTGTACTTTCCGGTGACATCGATGCCGTGTTCC
GCACACACAACCTCCCAAAACTTTGCTCCAATCTGGTTTCCGCATTGGCCTCCTTGAATGTGAAGAATCTCTCTC