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Detailed information on CNT3020470


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-14

BLAST vs NONCODE:
NONORUT000586, E-value = 6e-108

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Citrullus lanatusSetaria viridis62.7129.6298.52338forward
CNT30641383Citrullus lanatusNymphaea colorata62.7110.8296.45338reverse complement
CNT30702366Citrullus lanatusQuercus lobata62.8934.0498.82339forward
CNT30378673Citrullus lanatusArabidopsis thaliana56.0324.2297.68302forward
CNT30283003Citrullus lanatusChenopodium quinoa62.7135.3997.63338forward
CNT30406993Citrullus lanatusBeta vulgaris21.1529.4687.72114forward
CNT30632407Citrullus lanatusVigna unguiculata62.7112.5198.22338forward
CNT30506406Citrullus lanatusNicotiana attenuata62.7113.2198.82338forward
CNT3094274Citrullus lanatusSolanum tuberosum16.8830.8598.991forward
CNT30221833Citrullus lanatusHordeum vulgare49.7219.6396.64268reverse complement
CNT30569655Citrullus lanatusActinidia chinensis62.719.4997.34338reverse complement
CNT30554477Citrullus lanatusOryza glaberrima60.1144.8197.84324forward
CNT30147396Citrullus lanatusMedicago truncatula62.7111.3698.52338reverse complement
CNT30438197Citrullus lanatusAegilops tauschii62.7132.2898.52338reverse complement
CNT30245388Citrullus lanatusAvena sativa51.3980.0698.56277forward
CNT30140161Citrullus lanatusLolium perenne62.719.9398.52338reverse complement
CNT30605146Citrullus lanatusGossypium raimondii62.5222.0798.81337forward
CNT30216578Citrullus lanatusKalanchoe fedtschenkoi62.7110.1598.52338reverse complement
CNT3067980Citrullus lanatusLeersia perrieri29.8753.4996.27161forward
CNT30208772Citrullus lanatusHelianthus annuus22.2622.1898.33120reverse complement
CNT30628241Citrullus lanatusDaucus carota62.7112.5299.11338forward
CNT30682012Citrullus lanatusTriticum urartu62.7129.798.52338forward
CNT30720411Citrullus lanatusTriticum spelta62.7194.1598.52338forward
CNT30346087Citrullus lanatusEragrostis tef62.7132.6998.52338reverse complement
CNT30359520Citrullus lanatusLactuca sativa62.7113.2898.82338forward
CNT30484250Citrullus lanatusChara braunii35.0626.0394.18189forward
CNT30429739Citrullus lanatusPapaver somniferum63.4510.6393.27342reverse complement
CNT30571858Citrullus lanatusVitis vinifera62.899.7899.12339forward
CNT30644906Citrullus lanatusCannabis sativa25.4242.8195.62137forward
CNT3056076Citrullus lanatusAmborella trichopoda62.3414.694.35336reverse complement
CNT3038324Citrullus lanatusCucumis melo64.3818.498.27347forward
CNT30331625Citrullus lanatusDioscorea rotundata13.9123.5898.6775reverse complement
CNT3099709Citrullus lanatusOryza rufipogon38.969.6598.57210reverse complement
CNT30557400Citrullus lanatusPanicum hallii62.5224.5696.14337reverse complement

Expression of CNT3020470

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQVATYATKNFATLGQLELLPPFTGASIQSL*

>peptide 2 (45 aa)
MWPENSVQRLGILRRKSGLSGLVVVCHHLPPILHIRSRLSLRSYS*

Sequence

>CNT3020470
GTTGCTTTTGTACATTAATCAAAGTTAATCTTGTGCCATACTTGATTTTCATTAAAATTAACAAGTCCTAGAACATTTTTACCCTTTGTTTAAAATTAAT
GGGCAGATAAATGTGGCCCGAAAACTCGGTGCAGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCA
CCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGA
ATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCATGCAGGTCGCTACTTATGCGACAAAGAATTTCGCTACCTTAGGAC
AGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTCCTTCCAACACCTTGAAACACATATCTTGAATCTATGGATCAA
TTTGATGAAATTCTAGGCTTCAAATACAAAAAAATTCTA