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Detailed information on CNT30204348


BLAST search results

BLAST vs Swiss-Prot:
sp|P36181|HSP80_SOLLC, E-value = 7e-29

BLAST vs NONCODE:
NONMEST000006, E-value = 1e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Helianthus annuusOryza sativa25.7920.4585.3782forward
CNT3019808Helianthus annuusCitrullus lanatus38.3618.2183.61122forward
CNT30526133Helianthus annuusPhaseolus vulgaris23.93884.2176forward
CNT30712340Helianthus annuusGlycine max33.0218.2685.71105forward
CNT30566784Helianthus annuusActinidia chinensis33.6514.0885.05107forward
CNT30613762Helianthus annuusArabis alpina27.0421.586.0586forward
CNT30625276Helianthus annuusDaucus carota40.579.1785.27129forward
CNT3022206Helianthus annuusPopulus trichocarpa27.9916.3685.3989forward

Expression of CNT30204348

Peptides detected in this lncRNA

>peptide 1 (72 aa)
VISSGFLIQMGFCLFTNSHSFVTSLIFFFFFSSVSFSSSTSSTFPSSSFFSSSSSSSEISFSVVFSTHREIG*

>peptide 2 (68 aa)
GDFFGLPHPNGLLFVYQLPFICHFLDLLLFLLFGLLLFINFLYFPFLFFLLLLVFVIRNFLFGGLFNP*

Sequence

>CNT30204348
GGTGATTTCTTCGGGCTTCCTCATCCAAATGGGCTTTTGTTTGTTTACCAACTCCCATTCATTTGTCACTTCCTTGATCTTCTTCTTTTTCTTCTCTTCG
GTCTCCTTCTCTTCATCAACTTCCTCTACTTTCCCTTCCTCTTCTTTCTTCTCCTCCTCGTCTTCGTCATCAGAAATTTCCTTTTCGGTGGTCTTTTCAA
CCCATAGAGAGATCGGATAGCTAATGAACTCTGAATGTTTCTTGATCAAATCCTTAAGCCTGCGCTCTTCAAGGTACTCTAGCTGATCCTCTTTTAGGTA
TAGTGTCATTTTGGTCCC