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Detailed information on CNT30203835


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Helianthus annuusSetaria viridis16.2537.585.978forward
CNT30316236Helianthus annuusCorylus avellana40.4242.2781.44194forward
CNT30547527Helianthus annuusIpomoea triloba26.8829.7981.4129forward
CNT30513000Helianthus annuusJuglans regia58.335678.93280forward
CNT3019597Helianthus annuusCitrullus lanatus40.6226.0783.59195forward
CNT30405831Helianthus annuusBeta vulgaris24.3834.2185.47117forward
CNT3045373Helianthus annuusPrunus dulcis57.535.280.07276forward
CNT30561658Helianthus annuusActinidia chinensis58.3323.9380.36280forward
CNT3085191Helianthus annuusVigna radiata33.7522.5983.33162forward
CNT30510505Helianthus annuusSolanum lycopersicum33.9615.0185.89163forward
CNT30143941Helianthus annuusMedicago truncatula36.0438.6281.5173forward
CNT30313706Helianthus annuusCamelina sativa15.4222.785.1474forward
CNT3059659Helianthus annuusArabidopsis lyrata18.1220.0583.9187forward
CNT30345702Helianthus annuusEragrostis tef56.4633.5479.34271forward
CNT30361520Helianthus annuusSorghum bicolor39.7927.9281.15191forward
CNT30154011Helianthus annuusPrunus persica12.292191.5359forward
CNT3050899Helianthus annuusCucumis sativus33.1263.181.13159forward

Expression of CNT30203835

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVKHTLWEILTRSRSSQGTRKPEGLHDWKISLDVVQWGTRPLHFFKHVPTPL

Sequence

>CNT30203835
AAAACTGAAAATGGTAAAAACATGAATGTCAAAATTAACAGCATCAACGTCTGCAAGTAGGTATTTCTCACGACAACAAAACAAAACATAGTACAACCAG
CATACTAAAAAACATTGTAGAAAATATAACACGAAATCCAGATAGTAATTCTCGATACCATTTCATCCAGCGCATACAGCTAACATCTGGCGCTTACAGC
TTATCCTCAAACTCAGACAGTGGTGTCATCTGCTCCTTCAAACCTTTCCTCTTACGGATCTGGGTCACGAGAGTGCTTGCCTGCGAACCAGCTTCCAACG
GATCTGACCCCATCATGTCCCAATGGTCAAACACACACTGTGGGAAATCTTGACCCGAAGTAGAAGCTCTCAAGGCACCAGAAAACCCGAAGGACTCCAC
GACTGGAAGATAAGCCTTGATGTTGTACAGTGGGGTACCCGGCCTCTGCATTTCTTCAAACACGTGCCCACGCCTTTGAT