Detailed information on CNT3020362


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548694Citrullus lanatusIpomoea triloba4.7442.3786.67150reverse complement
CNT30504979Citrullus lanatusNicotiana attenuata4.7422.2687.33150reverse complement
CNT30223397Citrullus lanatusHordeum vulgare2.421.1190.7976forward
CNT30387536Citrullus lanatusTriticum turgidum2.5925.1587.882reverse complement
CNT30215771Citrullus lanatusHelianthus annuus4.7431.9887.33150reverse complement
CNT30154718Citrullus lanatusPrunus persica4.9622.6687.26157reverse complement
CNT3036406Citrullus lanatusCucumis melo6.9230.1788.58219forward
CNT30147862Citrullus lanatusBrachypodium distachyon1.9623.5793.5562forward

Expression of CNT3020362

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVTATTRTTKVKFRVGVEELVFSKVNNSTLPIRCWRWNIQ*

>peptide 2 (44 aa)
MSPTIAFGCRFEFWDDISFLSLGVNNSRPPSVTYVERPFEFQLT*

>peptide 3 (47 aa)
MNFGFDFLTLCDWCKHSDDDLNMSDQFNDWNINLLLILNACFFFFFF*

>peptide 4 (70 aa)
MELTLELLVQTRYETPTFEVMAQGPTGLVIDTTNPSLSLTLPMAPMLVFLLIVQSPHTETFRIVLCGSIL*

>peptide 5 (30 aa)
MNHMTNLDSNSHDGRLRRITCATDALIHFI*

>peptide 6 (31 aa)
MSFRVLGRHQLSLSWGQQLETSVSHLRRAPV*

>peptide 7 (31 aa)
MQVSIYILHSQTNLHSFEVLLDFKRDSFVLN*

>peptide 8 (40 aa)
MHLFATLFSIVSTAFERRDRLLLARSLFSFCLTLENNLHC*

>peptide 9 (75 aa)
MDRSLHFMNMNTLYFFRFDGPYLLKWRFSIINGGSLIKLRFAFRCSEKKEVEFVIVLSVNKCSRIEVIMRLNLFI*

Sequence

>CNT3020362
CTCCTTTAAATAGCACACAGCATATTCATTCGGTATTCACTCGCTCCGATCTTTAGGGCACGAAGTTGCCTTCTTCGCGTGCAAAAGCTTCGTGTTCGTA
TCTCTTTCTCATGGCTTCTTCTTCATGTACTGCGCGTCTTTAATGTTTTAGTTTTTGCTCGACTATGAACCACATGACGAATCTGGATTCAAATTCTCAC
GACGGTCGTCTGAGACGCATTACGTGCGCTACTGATGCACTGATCCATTTTATCTGATGGTCTACTTTGGTTTCTTTTCTTCCTTCAATTTTCTTTATGT
TCTTTTTTCCCTCTCTTACGAATGAATTTTGGTTTCGATTTTCTTACGCTCTGTGATTGGTGCAAGCATAGTGATGATGATTTAAACATGTCCGATCAAT
TTAATGACTGGAATATCAACCTCCTACTCATACTGAATGCTTGCTTTTTTTTCTTCTTCTTTTAAAACCGTGCCTTCAAATGTGTAATCCTTTCGGCTTT
CGGATTTTTTATTTTCTTTTCTGATGATTTATTTTGTTTGTGATGAGACCATGAGGAGACACTACTATTTGGCATGAGATTGAAGGATCAGTGAATTTGA
AATATACGAATTATAAAATCCTTTTCATTCTGAGTGCCAAACATGTGGTTTATGGTGTGATCAAGCATATTTAGTACTAACAAATTTTTTTAATTTTGAA
ATAACTACTGAATTTTTATAAATCCTGTATTCGAAATTTGCTTTTAGTTTCGTAAATTTTGTGTGTTTTCAATTGAAACCTTAATCATTCTTCGCAACAG
ATGGGAGTATAGTTTTGAAATGCCATTTGAGTAGATTTCCTGAGAAATTGAGTTAAGATGAAGTTTGGGGCGTGTTCTTGAAAATGTATTGTTTTCTAAT
ATTTTTCTTTCGATAATATATTCGTTTCTTTCAATAATATATTCGTTTTCAACGTTAGCTTTGGCTTTCAAGTCTGTTCGGCTCTTTCACTTTGTGAACT
TAACAACTGTGTTTCTTCATGTCATGGACCGGTCCCTTCACTTCATGAATATGAACACACTGTATTTCTTCAGATTTGATGGTCCATACCTGTTGAAGTG
GCGGTTTTCGATAATTAATGGTGGAAGTTTGATAAAATTAAGATTTGCTTTTAGATGCAGTGAGAAAAAGGAAGTTGAATTTGTTATCGTCCTCTCAGTG
AATAAATGTAGTAGAATCGAAGTCATAATGAGATTGAATCTTTTCATTTAGAGTGTTGATTGATCTGATCACTACAAGGCCCATACGGATAAGGAATTGA
AATTGATAACAAGTCAAATGCCACAGGCTCATAAGGACAATAGATTCTAAACACGTTGTAATGCTTTATTACTATTTTAATTTAAGAAAACTTGTTGAAA
TGTAGCTATGGTGACTGCCACTACTCGTACAACAAAAGTTAAGTTTAGAGTAGGTGTCGAAGAGCTCGTATTTTCCAAGGTAAACAACAGTACACTTCCC
ATTCGCTGTTGGAGATGGAACATTCAGTGAAGGAACTGTAGGAGATGCAATTGGAGTATGTTTGGTAATTAACATTTTTGACATCGCTCCCCTTTTGGTC
CTATTTGCTATACCTGCGATATCCTTGTGCTACTAGGTTATGGTAACTTATAAGTTGTGAGGTGTCGCTGAGATACTAAGAAATGTAAGGTTCATGATCA
AAATCGCCATCATTTTTGAAAGATAAATCAAAACAGAACTTATATTAGTACTGAATTACAACTCAAACCAGCAGAGTTCCTTCTAGTTGTGTGGCACCAT
GATCATGGTCAGCTTTAAGGAAAATGCAAGTCTCAATCTACATTTTGCATTCCCAAACTAATTTGCATTCTTTTGAAGTTTTGTTGGACTTTAAGCGAGA
TTCTTTTGTCCTCAACTGAATTGAACTCATGCAGAATTGAACATGTATAGTGCTTTTTAGCTTTCTTTAGGATTTGGCCCGAACTGTTTGGCAGATTCCC
ACGCGTTATGCACTTGTTTGCCACTTTGTTCTCAATTGTTTCCACTGCTTTTGAAAGGCGAGACAGGCTACTTTTAGCTAGGAGCCTCTTTTCCTTCTGC
CTAACTCTTGAAAACAATTTGCATTGTTAAGCATATAGCTAGTGTTTTGAGCCAGGTAATAATAACAGAATCTTTAGCAGAAGTTTATGATTCTTCTCTT
AGTGAGAAGCAAGTCAACTTTATTGCCCTAAACTAAAGGAGCAAGTCAAATTTGTTCGTACATGTGATTTCCCTCCTTTCGTCATCATAATTCTCAACAA
TCTATCTTGTATGTGCGACTTCCCTCCTTTTGTCATCATAATTCTCAGCCATCCATCCTTCGTAATTCTATATTGCTTTGGAACTTGTTAGGATGAGTTC
AGACCCTTCATCGAGCCAAATAGGCTTATGATACTCTATCGGGGCTTTTTGAGACATTAGACCACTTATCGGGACAACTTGGGCAAATATCGAGTCAACG
GGGACTATGAGTCCCACAATCGCTTTTGGATGTCGTTTCGAGTTTTGGGACGACATCAGCTTTCTCTCTCTTGGGGTCAACAACTCGAGACCTCCGTCAG
TCACCTACGTAGAGCGCCCGTTTGAATTTCAATTGACATAGAATTCGATGTGCTTCCATCTTCCATCAATATGGAACTAACTCTAGAGCTGCTCGTCCAA
ACTCGCTACGAGACCCCTACTTTTGAAGTCATGGCCCAGGGCCCCACTGGGCTTGTCATTGACACTACCAATCCGAGCTTGTCATTGACACTGCCAATGG
CACCAATGCTCGTCTTCCTGCTTATTGTTCAGTCGCCACACACTGAAACTTTTAGAATTGTCTTGTGTGGGAGTATCTTATAGGAACAGTTTGTATGCAA
CTTAATGGACTCAATTTCAATCTTGATTGAGTTATAGACTCATGGGAGCTTAGAGTTGTTCAAGTTGTTACTTATTATCTCAAGTTCTTTCCAAAGTCAG
AATCTAAATAAACAAATTGTTCACTAGAGGTTATTCCTGTTTTAAGAGAGATTTTGTGTATTCTTCATTAGAGGTTTAGTAGTACTTAAGAAAGAGGTAG
TATTATAAGAAGTCTTTAAAATAAAAATACTAACTTTCAAAATCTATTTTGAGCGGTTGTCAAAC