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Detailed information on CNT30203517


BLAST search results

BLAST vs Swiss-Prot:
sp|P37392|TBB1_LUPAL, E-value = 0.0

BLAST vs NONCODE:
NONPOPT000063, E-value = 5e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Helianthus annuusSetaria viridis45.2861.2581.73509forward
CNT30522155Helianthus annuusSetaria italica28.3836.2983.7319forward
CNT30641079Helianthus annuusNymphaea colorata27.1441.0581.64305forward
CNT30534291Helianthus annuusEucalyptus grandis17.9731.7186.14202forward
CNT30516889Helianthus annuusJuglans regia14.0626.1283.54158forward
CNT30376427Helianthus annuusArabidopsis thaliana37.5468.483.41422forward
CNT30727252Helianthus annuusCorchorus capsularis38.9758.4882.42438forward
CNT30381383Helianthus annuusManihot esculenta31.4120.0983.57353forward
CNT30402401Helianthus annuusBeta vulgaris25.824.4183.79290forward
CNT30168132Helianthus annuusPistacia vera13.6137.2383.01153forward
CNT3092760Helianthus annuusSolanum tuberosum14.5923.789.02164forward
CNT30223001Helianthus annuusHordeum vulgare13.2653.685.91149forward
CNT30562825Helianthus annuusActinidia chinensis30.1661.4185.84339forward
CNT30586804Helianthus annuusMusa acuminata18.0626.384.73203forward
CNT30511260Helianthus annuusSolanum lycopersicum18.5151.6187.5208forward
CNT30553024Helianthus annuusOryza glaberrima33.2726.1980.48374forward
CNT30261872Helianthus annuusBrassica rapa52.1466.2185.49586forward
CNT30608822Helianthus annuusGossypium raimondii27.6746.4285.53311forward
CNT30627268Helianthus annuusDaucus carota39.9536.2783.74449forward
CNT30681848Helianthus annuusTriticum urartu49.7363.1683.01559forward
CNT30722476Helianthus annuusTriticum spelta33.5456.3580.9377forward
CNT30341625Helianthus annuusEragrostis tef53.7461.9580.46604forward
CNT30569889Helianthus annuusVitis vinifera33.0177.9481.94371forward
CNT30706519Helianthus annuusPrunus avium35.0547.5384.26394forward
CNT3033661Helianthus annuusTheobroma cacao15.6684.6284.66176forward
CNT30322043Helianthus annuusAsparagus officinalis56.4975.8785.2635forward
CNT30119164Helianthus annuusCitrus clementina26.8764.8181.46302forward
CNT3036150Helianthus annuusCucumis melo10.8536.290.16122forward
CNT30149545Helianthus annuusBrachypodium distachyon7.6525.684.8886forward
CNT30575061Helianthus annuusOryza barthii36.5745.2182.48411forward
CNT30116105Helianthus annuusOryza nivara27.0541.1984.87304forward
CNT3049477Helianthus annuusCucumis sativus11.8346.8390.23133forward

Expression of CNT30203517

Peptides detected in this lncRNA

>peptide 1 (50 aa)
KKKPLKINNDTHCYIILYVSKTVNYQYISTHTFKKATLYRSSYTSSPTNQ*

>peptide 2 (54 aa)
MFLASHICWVSSGTVRARYCWDPREVRGANPTMKKWSRGNGIRLTASLRRSEFS*

>peptide 3 (40 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNMAVNCSLTRLNIS*

>peptide 4 (45 aa)
MQESLSPKHGGKLLAHTPKHFLNRCRVSNKRGRHFQTRWWDVTNG*

Sequence

>CNT30203517
AAAAAAAAACCCTTAAAAATAAATAACGACACTCATTGTTATATTATACTTTATGTTTCAAAAACAGTAAACTACCAATACATTAGCACACACACATTTA
AGAAAGCAACACTCTATAGAAGCTCATATACTTCATCACCAACCAATCAGTAAACTCCCACAAAACATATACCATTATACCAAACTTAACCTAAGACACA
AACACCCATATTAGCATTATATTTTTCAAGCCTCTTCCTCCTCGTACCCCTCTTCATCTTCCTCGTACTCACCTTCCTCATCAGCAGTTGCATCTTGGTA
TTGTTGATACTCCGAAACCAAATCATTCATGTTACTTTCAGCTTCAGTAAACTCCATCTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTT
CTCCTAAACATGGCGGTAAACTGCTCGCTCACACGCCTAAACATTTCCTGAATCGATGTCGAGTTTCCAATAAACGTGGACGCCATTTTCAGACCCGTTG
GTGGGATGTCACAAACGGTTGACTTCACATTGTTTGGGATCCATTCAACAAAGTAAGACGAGTTCTTGTTTTGTACATTGATCATTTGTTCATCCACCTC
TTTAGTGCTCATTTTACCGCGGAACATGGCTGAAGCGGTTAAGTAGCGGCCGTGGCGGGGATCGGCTGCACACATCATGTTTTTGGCATCCCACATTTGT
TGGGTGAGCTCGGGTACTGTGAGAGCGCGGTATTGCTGGGACCCACGCGAGGTTAGGGGTGCGAACCCGACCATGAAGAAGTGGAGCCGAGGGAATGGGA
TTAGGTTGACTGCAAGCTTGCGGAGGTCGGAGTTTAGTTGACCTGGGAAGCGGAGGCAGCAGGTGACACCGCTCATGGTGGCGGAGATTAAGTGGTTCAA
ATCTCCAACTCTGGGAGTGGTGAGCTTGAGTGTACGGAAACAGATATCATAAAGAGCCTCATTGTCGAGGACCATGCATTCGTCTGCATTCTCGACCAGT
TGATGCACCGATAGGGTGGCATTGTAGGGCTCGACCACTGTGTCGGACACCTTGGGTGACGGGAAAACCGAGAAGGTGAGCATCATCCGGTCCGGATACT
CCTCCCTTACCTTGGATATCAGCA