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Detailed information on CNT3020344


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30271983Citrullus lanatusChenopodium quinoa14.5325.1386.39294forward
CNT30172743Citrullus lanatusTrifolium pratense2.5725.1292.3152reverse complement
CNT30598585Citrullus lanatusFraxinus excelsior9.6822.9888.27196forward
CNT30205079Citrullus lanatusHelianthus annuus9.6827.1183.67196forward
CNT30367017Citrullus lanatusSorghum bicolor6.1832.0588125reverse complement
CNT30409854Citrullus lanatusPapaver somniferum9.6829.5684.18196forward
CNT30174921Citrullus lanatusVigna angularis4.9420.4986100forward
CNT30551824Citrullus lanatusOryza brachyantha5.1442.6284.62104forward
CNT3049671Citrullus lanatusCucumis sativus9.7329.0186.29197reverse complement

Expression of CNT3020344

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRVDCLSIHFKTSTIPSRTKHESFDSFGSHTQLEFQLL*

>peptide 2 (45 aa)
KILVEEANNHLVAIINHSIESGRKKRKEKKRKEKEKEKDGDGVGF*

>peptide 3 (56 aa)
MKKKKKTKKKKPFFLSYFLLHLWLPKQHLYQVLKTVLVLHVYYLVCFSIFVILINI*

>peptide 4 (71 aa)
MCRFCYIPSSSVFHFIGFLVGYKEIMAVPMSYTFTSRCFFFLIKGGETEEIICKEKKKKKKKKKKKKTWSI*

>peptide 5 (71 aa)
MVMVLGFERVVVNLKAKIMKSLKMMKKATTDYDKMEKSESMRVEIRSRKAQKLIQKTMKIADSPSSKTYAF*

>peptide 6 (75 aa)
MLSNSNSNSSSFYYQFHPFLCTFLHYYIYEEEKKNKKKKTFFPLLFSSSSLVTKTAFVSSFEDGISSTCLLFSVF*

Sequence

>CNT3020344
AAAATTTTGGTTGAGGAAGCCAATAATCATCTTGTAGCGATCATCAATCACTCAATAGAATCTGGGAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA
AAGAAAAAGAAAAAGATGGTGATGGTGTTGGGTTTTGAGAGAGTAGTAGTGAATTTGAAAGCAAAAATCATGAAGTCATTGAAGATGATGAAGAAGGCAA
CAACAGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAGGCCCAAAAGCTCATCCAAAAGACCATGAAAATTGCTGA
CTCTCCTTCTTCAAAAACTTATGCTTTCTAATTCTAATTCTAATTCCTCTTCCTTTTATTATCAATTTCACCCTTTTTTATGTACCTTCCTTCATTACTA
TATATATGAAGAAGAAAAAAAAAACAAAAAAAAAAAAACCTTTTTTCCTCTCTTATTTTCTTCTTCATCTTTGGTTACCAAAACAGCATTTGTATCAAGT
TTTGAAGACGGTATTAGTTCTACATGTTTATTATTTAGTGTGTTTTAGTATTTTTGTTATTTTAATTAATATATAGTAAGTGATGATCTAATTATAATTT
ATAGGAAAAGATGTGTAGATTTTGTTACATACCTAGTTCTAGTGTGTTTCATTTCATTGGTTTTTTGGTTGGTTATAAAGAAATTATGGCGGTCCCAATG
TCATATACATTTACATCCAGATGTTTTTTCTTTCTTATAAAAGGGGGAGAAACTGAAGAGATAATATGTAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACATGGTCAATCTAGCTAGATTTGGAAGATCTATCTATTATTTGTGACTTTTATAAAGGATATAGGAATGGTTCCAGAAAGTTTGATTC
TCTTTATGTTTGACAAGAAAAATAGATTTAACTAGCTATATATTTCTTTTTTAATTATTTAAAATTAAGTATATAAAACATTTGTTACACCTAAATTTAT
TATTTTTTTTCTATTTTTAAGATGTTTTCAAAAACCAACCTAAATTGAATTAATCAAATTCAATTTTTCTCGTTCTATTTCAAAGTTTTCATTCACTCAA
AACTGATCCGCTTCCATTTCGACTTTTCGTAAGCAAGCCCGGGCTCTTTCCAGCTGTTCAATGCCCCCCCGGGAGTTCTTCTGAATTTTGAATTGTTTTC
AAGATCCTTTGTTTTCGATTATCTAATAAATCACTTAATGAGAGTAGATTGTCTTTCCATTCATTTCAAAACTTCGACGATCCCTTCCCGAACCAAACAT
GAATCTTTCGATTCATTTGGCTCTCACACTCAATTAGAATTTCAACTATTGTAGTTAAGAAATATGCACACAATTGTAAGAAAATGAGAGAAAATAGGCT
TCATTTTTTAAAAACTAAAACAGTAAACTAAGGCCTAGTTTTGTAACCATTTTTTTTTTTTTTGAAAATTAAGTCAATAGACACTACTTCTACCTTCAAA
TTTATTTCTTTGTTATTTACATTTTACCAATGATTTAAAAAACCAAGTCAAAATTTGAAAACTAAAAAAATCAACTTTTAAAAAACTTGTTTTAGTTTTT
GGAATTTGGTAAAGAATTCAACTATTATATTTGAGAGAGATGAAAATCAATGTAAGAAATGAGAAGTAAATATGTTTAATTTTCTAAAACAAAAACAAAA
AAATGAAATGATTACCAAAGAGGACCTAAATCGTTATCCAACGAAGTCTTAATATTTTCAACAATTAGTGTCTTTGTCCACTTTGGATTAGTTAGAGATT
AAGGGTGCTTATGAAAATAAGTTATTTTTAGAAAAAAAAAGTTAAATTGTTTGGAACCACTCAAAATAGCTTTCAAAATATGTGTATTTTAAAAAGAGTT
TCTGCTCTTAAAGAAAGAAATTATCGGGTCAATCAAATCAATGGGCTCTAAAAGTATGGATTTTTTAGTTAAAAGTAAAGGGCAGGTGAAGAGTTGAAAT
TAATTTTGGGAAAAAATAGAATGT