Detailed information on CNT30203328


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673952Helianthus annuusSetaria viridis53.2266.6794.52438forward
CNT30525798Helianthus annuusPhaseolus vulgaris30.2632.2594.78249reverse complement
CNT30177674Helianthus annuusSecale cereale10040.5495.5823reverse complement
CNT30221081Helianthus annuusHordeum vulgare60.1524.4495.76495forward
CNT30384202Helianthus annuusTriticum turgidum77.5238.5395.92638reverse complement
CNT30538116Helianthus annuusBrassica napus72.949.598.33600forward
CNT30555411Helianthus annuusOryza glaberrima31.7164.7695.79261reverse complement
CNT30662247Helianthus annuusTriticum dicoccoides26.6163.8594.52219forward
CNT30460491Helianthus annuusSaccharum spontaneum15.4362.8795.28127forward
CNT3017925Helianthus annuusZea mays70.650.9296.56581reverse complement
CNT3067405Helianthus annuusLeersia perrieri50.310092.75414forward
CNT30647597Helianthus annuusRosa chinensis37.5560.5994.82309forward
CNT30680054Helianthus annuusTriticum urartu63.6728.7396.37524reverse complement
CNT30347224Helianthus annuusEragrostis tef20.1766.490.36166forward
CNT30371139Helianthus annuusOryza glumipatula37.7962.8395.18311reverse complement
CNT30409295Helianthus annuusPapaver somniferum68.0499.1296.61560forward
CNT30149641Helianthus annuusBrachypodium distachyon88.0935.9695.17725forward
CNT30102660Helianthus annuusOryza rufipogon40.5889.393.11334forward
CNT30576588Helianthus annuusOryza barthii15.829.6196.15130reverse complement
CNT30604605Helianthus annuusOryza punctata2692.6493.46214reverse complement
CNT30603109Helianthus annuusGaldieria sulphuraria16.8953.2682.73139reverse complement

Expression of CNT30203328

Peptides detected in this lncRNA

>peptide 1 (30 aa)
VRSWLRMNAGGMLNTCKSDGKWCFQWRTGE*

>peptide 2 (36 aa)
MISSWSERMISHTGTETRPRLLREAAVGNFPQWAKA*

>peptide 3 (40 aa)
MQALSGMIGRKASVGGFLSPPSNPRAQLWTGGGNYQAGVR*

>peptide 4 (37 aa)
MGESLTEQCRVEVEGPRVVNFFSRRRSNDGIWGISIG*

Sequence

>CNT30203328
GAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTAACGCGT
AAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTAGGTTGAGGAGCAAAAGGAGGAATCTGCCCGAGGAGGGGCTCACG
TCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGAGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGA
CTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTT
TTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAAT
GATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACTCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGG
TAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGCAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTAGGACGACACTGACACTGAGA
GACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTA
GCTAACGCGTTAAGTATCCCGCC