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Detailed information on CNT3020310


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 7e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616445Citrullus lanatusSesamum indicum13.120.9592.4179forward
CNT30525466Citrullus lanatusPhaseolus vulgaris11.7723.9185.9271forward
CNT3050674Citrullus lanatusCucumis sativus20.916.8292.86126forward

Expression of CNT3020310

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LKLIQSYRYRESNVHHTHTNPNRRLHSELD*

>peptide 2 (59 aa)
MRRGSASWPPQSPEWATSTWSSSVHRSILVTCGSHGTRIRPAKINSIQFFILVTVFPFIS

>peptide 3 (61 aa)
MESARVELRGLVDNETDALDLTDVVKANNPDECVGVVLLGLLNLLNGQLPHGPVASIVVSW*

>peptide 4 (77 aa)
MHTGFIGNLTTNQSIIYSNSNWKVEEINIGIEVHRSKRKRKKKKKMGNWIESQVMWKRGGKRQMLEIRLKKAGNGIS*

Sequence

>CNT3020310
CTGAAATTGATTCAATCTTATCGTTATCGTGAATCTAATGTGCATCATACACACACAAACCCGAATCGAAGATTGCACAGCGAATTAGATTGAATTCCAG
AAGAAAGATGCATACAGGATTCATAGGGAATTTAACAACAAATCAAAGCATCATTTATTCCAATTCGAATTGGAAAGTCGAGGAAATAAACATAGGGATT
GAAGTACACAGATCAAAACGTAAAAGGAAAAAAAAAAAAAAAATGGGAAATTGGATTGAAAGCCAAGTGATGTGGAAGCGAGGTGGAAAAAGGCAAATGC
TGGAAATTCGCCTCAAGAAAGCTGGGAATGGAATCAGCTAGAGTAGAACTTAGGGGGCTTGTAGACAATGAAACTGATGCACTGGACTTGACGGACGTTG
TCAAAGCCAATAACCCTGATGAATGCGTCGGGGTAGTGCTTCTTGGCCTCCTCAATCTCCTGAATGGGCAACTTCCACATGGTCCAGTAGCGTCCATCGT
AGTATCCTGGTGACCTGTGGTTCTCACGGTACACGAATCCGTCCTGCAAAAATTAACAGTATACAATTTTTCATACTTGTAACTGTTTTCCCTTTCATTT
CCA