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Detailed information on CNT30203008


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30491922Helianthus annuusOlea europaea7.4528.2887.882forward
CNT30504398Helianthus annuusNicotiana attenuata24.2517.5892.13267reverse complement
CNT3045660Helianthus annuusPrunus dulcis10.1726.7386.61112reverse complement
CNT3090302Helianthus annuusSolanum tuberosum25.4344.2386.07280forward
CNT30304569Helianthus annuusTriticum aestivum4.8123.7790.5753reverse complement
CNT30597766Helianthus annuusFraxinus excelsior29.6167.3692.94326reverse complement
CNT30654158Helianthus annuusRosa chinensis6.2721.7792.7569reverse complement
CNT30644762Helianthus annuusCannabis sativa14.7137.8590.12162reverse complement
CNT3039143Helianthus annuusCucumis melo24.2524.0191.01267forward

Expression of CNT30203008

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCKSKSGGSLPGVEHKPKKIKEAHLRTRK*

>peptide 2 (31 aa)
WKYPFMKEKRHYVTLLHCKRLYYDYVMDPPI*

>peptide 3 (36 aa)
MHLGLTYSATCQIYWVIWDFPVFSPIEISSVSPTKD*

>peptide 4 (45 aa)
MGKLMRFSMSECAHTCSSLEDTSRNHFPLFFLIFFINFSEFMNKI*

>peptide 5 (53 aa)
MTMLWTPLFSGLFQRKGSYLFYSVGNNGTILFVGTKRSRFILYSISTNTQWGS*

Sequence

>CNT30203008
CATGGAAATACCCCTTTATGAAAGAAAAAAGACACTACGTAACTTTATTGCATTGTAAAAGACTATACTATGACTATGTTATGGACCCCCCTATTTAGTG
GATTATTTCAACGTAAGGGTTCATATTTGTTCTATTCTGTTGGTAATAATGGAACAATTTTGTTCGTAGGAACAAAGAGAAGCAGATTTATTCTATACTC
GATAAGTACCAATACGCAATGGGGAAGTTAATGCGATTTTCTATGAGCGAATGTGCCCATACTTGTTCATCATTAGAGGACACTAGTCGTAATCATTTTC
CCTTATTTTTTCTTATTTTCTTTATAAATTTTTCAGAATTTATGAATAAAATCTGATTAGGATAAAGTACAATATTATAAAGATAAAGTACAATATTATA
AATAAAAAGAAAGGCTTTGTTACGTTTCCACATCAAAGTAAAATATAGTACTTAGTTCTTTTTTATTTCATTTAATGCCTATTGGTGTTCCAAAAGTACC
TTTTCGAAGTCCTGGAGAGGAAGATGCATCTTGGGTTGACATATAGTGCGACTTGTCAGATATATTGGGTCATATGGGATTTCCCCGTTTTCTCCCCAAT
CGAGATATCCTCTGTTTCGCCCACGAAAGATTAATTGAATCATAAAAAATTTGGAGCGTGAAGTGCAATTAGATCCATTTTTGGGGGGGATTCGAATTAC
TATTATCAATTAGAAGAATTTATGGTTGGCTTAGTTGGACTGCTACATTGAAGTATCCAGACTCCGTTAAAAAAAACCAAGTGGTAATATATCTATTTTA
TATCATAAAGGATTCCTATTTTTAAAGAAATCTTTTTTTGTAAGTAGAAGTTTTTTTCAAACTTTGAAGGGATAACAAAAAGAAGTGGTAATGGGAGCAT
TTGTACTATATGTGCAAATCAAAATCGGGCGGATCTTTACCCGGAGTAGAGCATAAACCTAAAAAGATTAAAGAGGCCCATTTAAGAACAAGAAAATGAC
ATCGTGATTTGGATTGGATCTCGATGAAACAATCCATCAATGAGAAGTAAATTGGATAAGTTTAATGAATTCTTTTTTTTTATTATTATACGTTATAAGG
A