« Back to Pisum sativum search


Detailed information on CNT30202349


BLAST search results

BLAST vs Swiss-Prot:
sp|B5LMS3|NU6C_CICAR, E-value = 2e-82

BLAST vs NONCODE:
NONTPRT002931, E-value = 5e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020910Pisum sativumCitrullus lanatus4.7130.6394.1268forward
CNT30624957Pisum sativumDaucus carota25.7623.486.29372forward
CNT3025537Pisum sativumPopulus trichocarpa11.5741.8592.22167forward
CNT30148821Pisum sativumBrachypodium distachyon7.8955.0792.98114forward
CNT30551956Pisum sativumOryza brachyantha31.8618.279.57460forward

Expression of CNT30202349

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MGLVSNTTPKLPNRRPDPRKTKRKSCIVSGRSIICKKKXKKKTKKYKFHDLIDITRNKFLYTSIFLCIEKPK*

>peptide 2 (51 aa)
GGYSNAMNNPVSNTGNNISKRTFSCASRHAELHIFLYSQRGIDSIKDQISK*

>peptide 3 (31 aa)
MQLQNESLLKYIIKIYKPEPVPTKKQKKWGW*

Sequence

>CNT30202349
GGAGGGTATAGTAATGCTATGAATAATCCAGTATCGAATACTGGTAATAATATCAGCAAAAGAACGTTCTCCTGTGCTTCCAGACATGCCGAGCTCCACA
TATTCTTATACAGTCAAAGGGGGATCGATTCCATAAAAGATCAGATCAGTAAGTAGAAATTTACTGAAATTGAATTTTTGTGTTACGATCGTCAATGGAG
TACCAAGGGTCTCTTTCGAGTAGACGCAATCAGTATAGCTATCCTTCTTGGAACACAGCAACGAAATTTCACAATCAGTGACCAGATCAAGTACTACAAA
ATAAAATTTCTTTTTTTGCTGGTTGTTTGTTTCGATGTACTGAATCGAAAATTCCTCCAAGTTTAAGACTATAATAAGATGAGGGTTCTTTCCATTGATT
ATTAGCTTCGGACAGAATCTTGATTTCTATTACTAGTTCTATAAAGATTTCTTACTGGCGAGCTACGACAATTGCACCTATCAAAGAAACTAAAAGAATT
ATTGAAATTAGTTCAAATGGAAGAAAAAAATCTGTTGATAAATGAATTCCAATTTGTTGACTAGTACTTATCAAATCTTGCTCAATAATCTGATTTGGTC
TTGTAGTCCAAATAATTCCGTACCATGATGTATCTGAAATAATAGTTATTAGTGAAACAAAAATACTTGTACAAACTATCAAAGTCATTCCATCCCCTAC
GGTCCAAAGATTCAAATCTTGGTAATATTCGGAACTATTCATGAACATCACAGCAAATATGATTAAAATGTTAATAGCTCCCACGTAAATAAGTAGCTGT
GATGCAGCTACAAAATGAGAGTTTGCTAAAATATATAATAAAGATATACAAACCAGAACCAGTCCCAACGAAAAAGCAGAAAAAATGGGGTTGGTAAGTA
ATACTACTCCTAAACTTCCTAATAGAAGACCCGATCCCAGAAAGACTAAAAGAAAATCGTGCATCGTTTCAGGCAGATCCATTATATGTAAAAAAAAAAA
NAAAAAAAAGACAAAGAAATATAAATTTCATGACCTTATTGATATCACCAGGAATAAATTTTTATATACTTCAATTTTTCTTTGCATTGAAAAACCTAAG
TAGTTTAAATTGATATAGTTAGGGTTATATAATCAATGTCATTCCACTCTTTTCTTTATACGAAAGAGTAGTTTGAAACGATATTAAAACTAAAGTATAA
AGGTAGATAGAACATATATAACATTGAAAATCTTATTGAAATTCAATAAGATTTTCAATTTCGATAATATATATTGATATATTCTATTTAAGAATATAGT
TCTCTAATAATTATAGAATATTTCTAATCTGATATCGACTATATTATTCATTTTTTATACAATTTTTGAAAATATTTTATTTCGATTATTCTATTTATAT
ATTCTATATATTATCGATTTATATATAGAATATTCTTTTTTTTT