Detailed information on CNT30202316


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBS8|RPOC1_LOTJA, E-value = 6e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30699079Pisum sativumQuercus lobata65.3994.290.46325forward
CNT30632296Pisum sativumVigna unguiculata101.8160.4587.15506forward
CNT3085011Pisum sativumVigna radiata24.1437.0489.17120forward
CNT30314046Pisum sativumCamelina sativa91.9511.9288.4457forward
CNT30129950Pisum sativumCorymbia citriodora43.2643.3591.63215forward
CNT3039151Pisum sativumCucumis melo100.658.4888.6500forward
CNT30100313Pisum sativumOryza rufipogon27.1659.2190.37135forward

Expression of CNT30202316

Peptides detected in this lncRNA

>peptide 1 (56 aa)
LPTFRSSHLSVDPSSPNSFHSSNEESIIILKSRSTNCSRIAPAPLEISLFRNVSKP*

Sequence

>CNT30202316
TCTTCCAACTTTTCGATCTTCCCATTTGTCAGTGGACCCCTCTTCTCCTAATTCTTTCCATTCTAGCAACGAAGAATCCATAATAATTCTTAAATCCAGA
TCAACTAATTGTTCGCGTATAGCACCCGCTCCACTAGAAATTTCTCTATTTCGAAATGTATCGAAACCTTGAGTAGCAAAAAAGAGGGGGATACTGTATT
TCCAGGATTGGATTTCATATTTGAATGAACCTCGTAATCGTAAGAAAGTTGGTTTTTTAACTACGGGCCTAGCAAAAGAAAAATCGCAGTATACTAGATC
CTCTAATTCTTTAAGAGGTTTATCTAAAAGGCTCGCGATATAACTAGGAAGACGTTTCAAATACCACACATGGGTTACAGGACATGCTAATTTGATATAT
CCCATTTGATATCTACGTATCCGAGAATCAACAAATTCTACTCCGCATTGTTCACAAAATTTTGGTTGGTCTTTTTTATCTCCGATTACTCGATAAT