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Detailed information on CNT30202139


BLAST search results

BLAST vs Swiss-Prot:
sp|Q19V63|YCF3_CHLAT, E-value = 2e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549732Pisum sativumIpomoea triloba10.0932.4490.08121reverse complement
CNT30588787Pisum sativumMusa acuminata10.6820.0684.38128reverse complement
CNT30214788Pisum sativumHelianthus annuus5.7521.6392.7569forward

Expression of CNT30202139

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MELITRKEVNYMSFKLAFGLIIQFNRLFLVLSFLLPSEE*

Sequence

>CNT30202139
AACTCCTTATAAATTTTGATTCATTAACAAATATATCGGCAATAAAAAAAAGAATCTTGATAAAACTCTTTCACTTCACATAGAATTCGACATAAATGAA
TGTGAGAAAATTGAAAGAAAAAAAAAGAAAATAATAAAAAGACTGTTCTTATTCAAAACGCCCTGTGATCTTCAACCAATTTTGTGCCTCAATATAATTA
CCAGGGGTAAGGGCTATAGCTTGTTTCCAATATTCAGCAGCTTGATTAGAATTCGACAGAAATGAATGTGATAAAATTGAAAAAAAAAAAAGAAAATAAT
AAAAAGACTGTTCTTATTCAAAACGCCCTGTGATCTTCAACCAATTTTGTGCCTCAATATAATTACCAGGGGTAGGGGCTATAGCTTGTTTCCAATATTC
AGCAGCTTGATCAAACCAAGATTCTGCAATTTCAGAATCTCCCTGTCGAATGGCCTGTTCTCCGCGGTCGGAATAGGTGAGTAAAATCCTTCCCTTAGAA
CCGTTCTTGAGAGTTTCCTGACTCATACGGCTCAACAGTCAATTCTTTTGATCTTCCATGGAGTTAATAACAAGAAAAGAGGTTAATTACATGAGTTTCA
AACTTGCCTTTGGATTAATAATTCAATTTAATCGTTTGTTTTTAGTTTTATCTTTTCTCCTACCTTCTGAAGAATAAAGCATCGATATTAACACTAACGC
CCTTATTCTCATTTTCTGAAAGGTAACTATCTCGATTTCATATATCATTTCATATATAATATATCTATTTCTATAGAATCTTTGAGAAAGACTTTTCTTC
ATAAGAAAAGACTTACTATCTTTGGGATCCGATACTACACCGCTGCTCAAAACCTTAGGGGATCAACTTTATTACATAAGTTGATTTCTAATCTATCATC
ATATAAGTAAGCAGTTCTTGTTGTATCGGCCAAAAACCTTGTTAATTGATCTTTACGTCTCGATTTCATATATCATTTCATATATAATATATCTATTTCT
ATAGAATCTTTGAGAAAGACTTTTCTTCATAAGAAAAGACTTACTATCTTTGGGATCTGATACTACACCGCTGCTCAAAACCTTATGGGATCAACTTTAT
TACATAAGTTGATTTCTAATCTATCATCATATAAGTAAGCAGTTCTTGTTGTATCGGCCAAAAACCTTGTTAATTGATCTTTACGGTGCTTCCTCTATC