Detailed information on CNT30202038


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378667Pisum sativumArabidopsis thaliana24.8725.2993.99283reverse complement
CNT3062651Pisum sativumArabidopsis lyrata60.1182.2194.15684forward
CNT30266045Pisum sativumBrassica rapa2974.4990.3330reverse complement
CNT30612440Pisum sativumArabis alpina19.95100.8994.71227reverse complement
CNT30126841Pisum sativumCorymbia citriodora29.9691.6791.2341reverse complement
CNT30363927Pisum sativumSorghum bicolor31.4688.8392.46358reverse complement

Expression of CNT30202038

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLLGSEHKLVMLSATGLSPSRVQHSTASPSSTTLVLL

>peptide 2 (61 aa)
MSRRLILQQARGQSPSSSHCLGAYGFMFYFTPRQGFFSPFPHGTTSLSVTQEYLALQGGPC*

>peptide 3 (56 aa)
MFSLLKPTFSLPLRPTLLARVLLSKAERSPTDSFLHPTASANRLAPFIFGARALDQ*

>peptide 4 (43 aa)
MSSQLLRLNAFRGEPASSGFDWHSPLTTTHPLIFQHQSVRTST*

>peptide 5 (29 aa)
MDRSPRFGSISSDSSPMKTRFRYGSGGFP*

>peptide 6 (65 aa)
TGILTCCPSTTPFGLILGPDLPSVDEPCGGILRFSGHWILTNVFVTQADILASASSNPARAGTSF*

Sequence

>CNT30202038
GTACAGGAATATTAACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGTCCTGACTTACCCTCCGTGGACGAACCTTGCGGAGGAATCCTTAG
GTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCAACCCTGCTCGCGCGGGTACTTCTTTCTAA
GGCGGAACGCTCCCCTACTGATTCATTTTTACATCCCACAGCTTCGGCAAATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCT
ATTACGCACTCTTTGAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTATCTCTGCACTCCTACCTCCTTTATCACTGAGCGATCATTTAGGGGCCTTAG
CTGGTGATCTGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCGTCGGTGTCATATCTAGTATTCAGAGTT
TGCCTCGATTTGGTACCGCTCTCGCGGCCCGCGCCGAAACATGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCA
GCTAGCTCTGGGTTCGATTGGCATTCACCGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCTAAACT
TCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAGTAGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCCTTA
ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCCAGCTCCTCCCACTGCTTGGGGGCTTACGGTTTCATGTTCT
ATTTCACTCCCCGCCAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTG
ATTCACACGGAATTTCACGTGCCCCATGTTACTCGGGTCAGAGCATAAGCTAGTGATGCTTTCGGCTACTGGACTTTCACCATCTAGGGTGCAACATTCG
ACTGCTTCGCCTAGCAGCACGACGCTTGTATTGCTCTC