Detailed information on CNT30202031


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3088853Pisum sativumVigna radiata23.4665.9392.88267forward

Expression of CNT30202031

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSRRLILQQARGQSPSSSHCLGAYGFMFYFTPRQGFFSPFPHGTTSLSVTQEYLALQGGPC*

>peptide 2 (65 aa)
TGILTCCPSTTPFGLILGPDLPSVDEPCGGILRFSGHWILTNVFVTQADILASASSNPARAGTSF*

>peptide 3 (29 aa)
MDRSPRFGSISSDSSPMKTRFRYGSGGFP*

>peptide 4 (36 aa)
MLLGSEHKLVMLSATGLSPSRVQHSTASPSSTTLVLL

>peptide 5 (56 aa)
MFSLLKPTFSLPLRPTLLARVLLSKAERSPTDSFLHPTASANRLAPFIFGARALDQ*

Sequence

>CNT30202031
GTACAGGAATATTAACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGTCCTGACTTACCCTCCGTGGACGAACCTTGCGGAGGAATCCTTAG
GTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCAACCCTGCTCGCGCGGGTACTTCTTTCTAA
GGCGGAACGCTCCCCTACTGATTCATTTTTACATCCCACAGCTTCGGCAAATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCT
ATTACGCACTCTTTGAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTATCTCTGCACTCCTACCTCCTTTATCACTGAGCGATCATTTAGGGGCCTTAG
CTGGTGATCTGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCGTCGGTGTCATATCTAGTATTCAGAGTT
TGCCTCGATTTGGTACCGCTCTCGCGGCCCGCGCCGAAACAGTGCTTTACCCCTAGATGTCCATCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCA
GCTAGCTCTGGGTTCGATTGGCATTCACCGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCTAAACT
TCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAGTAGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCCTTA
ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCCAGCTCCTCCCACTGCTTGGGGGCTTACGGTTTCATGTTCT
ATTTCACTCCCCGCCAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTG
ATTCACACGGAATTTCACGTGCCCCATGTTACTCGGGTCAGAGCATAAGCTAGTGATGCTTTCGGCTACTGGACTTTCACCATCTAGGGTGCAACATTCG
ACTGCTTCGCCTAGCAGCACGACGCTTGTATTGCTCTC