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Detailed information on CNT30201936


BLAST search results

BLAST vs Swiss-Prot:
sp|P06006|PSBD_PEA, E-value = 3e-91

BLAST vs NONCODE:
NONVVIT000784, E-value = 1e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30284073Pisum sativumTriticum aestivum71.7220.1491.17634forward
CNT30563336Pisum sativumActinidia chinensis13.0156.9393.91115reverse complement
CNT30236148Pisum sativumBrassica oleracea61.6535.4893.94545forward
CNT30555990Pisum sativumOryza glaberrima38.9121.9291.57344forward
CNT30257701Pisum sativumAvena sativa58.8274.9390.96520forward
CNT30664842Pisum sativumTriticum dicoccoides20.8127.0690.76184forward
CNT30351849Pisum sativumEragrostis tef12.3327.3995.41109reverse complement
CNT30367840Pisum sativumSorghum bicolor34.9568.8290.61309forward
CNT30426340Pisum sativumPapaver somniferum31.7935.3593.59281forward
CNT30100296Pisum sativumOryza rufipogon26.5852.4691.49235forward

Expression of CNT30201936

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRLILSRHPRTNTFTQPRVARWGSKIKPCSYMGFSGTK*

>peptide 2 (55 aa)
APAQNTINPAWATWAPSSLPDKLISRAFPAHQAKPVDSWSRPVKAKVPLKSVSTW*

Sequence

>CNT30201936
GCTCCGGCCCAGAATACTATTAATCCGGCATGGGCTACATGGGCCCCCAGTAGTTTACCGGATAAATTGATAAGTCGGGCATTCCCGGCCCACCAAGCAA
AACCAGTAGATTCTTGGTCACGACCAGTTAAAGCTAAAGTTCCATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAG
GCTGATCTTGAGTCGCCATCCACGCACGAATACCTTCACCCAACCTAGAGTTGCTAGATGGGGAAGTAAAATTAAGCCTTGTTCATACATGGGCTTCTCG
GGTACGAAATGAGCAACTTCAAATAGGTTCATTGCTCCGGCCCAGAATACTATTAATCCGGCATGGACTACATGGGCCCCCAGTAGTTTACCGGATAAAT
TGATAAGTCGGGCATTCCCGGCCCACCAAGCAAAACCAGTAGTTTCTTGGTCACGACCAGTTAAAGCTAAAGTTCCATTAAAGAGCGTTTCCACGCGGTA
GAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCTTGAGTCGCCATCCACGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGT
CTCAAATTCAGGATCTTCCGCTGCGAGGATTTCTTGAGAAACAAAGTCATAGGCACGTAGGTTCAGGGCCAGACCGACTACTCCAAGAGCACTCATCCAT
AAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCAGTAACCA
TTGAATAAGTTTCTTCTGCTTGGGTTGGGTTAAAAGCCCGGAATGTATTTGCGCCATCACCATCTTCAAATAAGGTATTTTCTA